Tom Gilbert
Professor
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Genomic signatures of near-extinction and rebirth of the crested ibis and other endangered bird species
Li, S., Li, B., Cheng, C., Xiong, Z., Liu, Q., Lai, J., Carey, H. V., Zhang, Q., Zheng, H., Wei, S., Zhang, H., Chang, L., Liu, S., Zhang, S., Yu, B., Zeng, X., Hou, Y., Nie, W., Guo, Y., Chen, T. & 13 others, , 2014, In: Genome Biology (Online Edition). 15, 16 p., 557.Research output: Contribution to journal › Journal article › Research › peer-review
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Genomics of adaptive evolution in the woolly mammoth
Díez-del-Molino, D., Dehasque, M., Chacón-Duque, J. C., Chrzanová Pecnerová, Patrícia, Tikhonov, A., Protopopov, A., Plotnikov, V., Kanellidou, F., Nikolskiy, P., Mortensen, P., Danilov, G. K., Vartanyan, S., Gilbert, M Thomas P, Lister, A. M., Heintzman, P. D., van der Valk, T. & Dalén, L., 2023, In: Current Biology. 33, 9, 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Geographic and temporal dynamics of a global radiation and diversification in the killer whale
Morin, P. A., Parsons, K. M., Archer, F. I., Avila Arcos, M. D. C., Barrett-Lennard, L. G., Dalla Rosa, L., Duchêne, S., Durban, J. W., Ellis, G. M., Ferguson, S. H., Ford, J. K., Ford, M. J., Garilao, C., Gilbert, M. T. P., Kaschner, K., Matkin, C. O., Petersen, S. D., Robertson, K. M., Visser, I. N., Wade, P. R. & 2 others, , 2015, In: Molecular Ecology. 24, 15, p. 3964-3979 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Glacial survival of boreal trees in northern Scandinavia
Parducci, L., Jørgensen, T., Tollefsrud, M. M., Elverland, E., Alm, T., Fontana, S. L., Bennett, K. D., Haile, J. S., Matetovici, I., Suyama, Y., Edwards, M. E., Andersen, K., Rasmussen, M., Boessenkool, S., Coissac, E., Brochmann, C., Taberlet, P., Houmark-Nielsen, M., Larsen, N. K., Orlando, L. A. A. & 4 others, , 2 Mar 2012, In: Science. 335, 6072, p. 1083-1086 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Global distribution of Chelonid fibropapilloma-associated herpesvirus among clinically healthy sea turtles
Alfaro Nuñez, L. A., Bertelsen, Mads Frost, Bojesen, Anders Miki, Rasmussen, I., Zepeda Mendoza, M. L., Olsen, Morten Tange & Gilbert, M Thomas P, 2014, In: B M C Evolutionary Biology. 14, 11 p., 206.Research output: Contribution to journal › Journal article › Research › peer-review
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Greenland sled dogs at risk of extinction
Sonne, C., Langebæk, Rikke, Dietz, R., Andersen-Ranberg, E., Houser, G., Hansen, Anders Johannes, Sinding, Mikkel Holger Strander, Olsen, Morten Tange, Egevang, C., Gilbert, M Thomas P & Meldgaard, Morten, 2018, In: Science. 360, 6393, p. 1080-1080Research output: Contribution to journal › Letter › Research › peer-review
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Grey wolf genomic history reveals a dual ancestry of dogs
Bergström, A., Stanton, D. W. G., Taron, U. H., Frantz, L., Sinding, M. H. S., Ersmark, E., Pfrengle, S., Cassatt-Johnstone, M., Lebrasseur, O., Girdland-Flink, L., Fernandes, D. M., Ollivier, M., Speidel, L., Gopalakrishnan, S., Westbury, M. V., Ramos-Madrigal, J., Feuerborn, T. R., Reiter, E., Gretzinger, J., Münzel, S. C. & 61 others, , 2022, In: Nature. 607, 7918, p. 313-320Research output: Contribution to journal › Journal article › Research › peer-review
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Gut Microbiota Linked with Reduced Fear of Humans in Red Junglefowl Has Implications for Early Domestication
Puetz, Lara Christine, Delmont, T. O., Aizpurua Arrieta, Ostaizka, Guo, C., KU, thw266, Katajamaa, R., Jensen, P. & Gilbert, M Thomas P, 2021, In: Advanced Genetics. 2, 4, 12 p., 2100018.Research output: Contribution to journal › Journal article › Research › peer-review
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HIV-2 down, HIV-1 to go? Understanding the possibilities of treatment as prevention
Bruhn, C. A. W. & Gilbert, M Thomas P, Apr 2011, In: The Lancet Infectious Diseases. 11, 4, p. 260-261 2 p.Research output: Contribution to journal › Comment/debate › Research
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Herbarium specimens reveal a historical shift in phylogeographic structure of common ragweed during native range disturbance
Martin, M. D., Zimmer, E. A., Olsen, Morten Tange, Foote, A. D., Gilbert, M Thomas P & Brush, G. S., 2014, In: Molecular Ecology. 23, 7, p. 1701-1716 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Hi-C chromosome conformation capture sequencing of avian genomes using the BGISEQ-500 platform
Sandoval-Velasco, Marcela, Rodríguez, Juan Antonio, Estrada, C. P., Zhang, G., Aiden, E. L., Marti-Renom, M. A., Gilbert, M Thomas P & Smith, O., 2020, In: GigaScience. 9, 8, 7 p., giaa087.Research output: Contribution to journal › Journal article › Research › peer-review
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High-coverage genomes to elucidate the evolution of penguins
Pan, H., Cole, T. L., Bi, X., Fang, M., Zhou, C., Yang, Z., Ksepka, D. T., Hart, T., Bouzat, J. L., Argilla, L. S., Bertelsen, M. F., Boersma, P. D., Bost, C. A., Cherel, Y., Dann, P., Fiddaman, S. R., Howard, P., Labuschagne, K., Mattern, T., Miller, G. & 26 others, , 2019, In: GigaScience. 8, 9, p. 1-17Research output: Contribution to journal › Journal article › Research › peer-review
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High-throughput sequencing of ancient plant and mammal DNA preserved in herbivore middens
Murray, D. C., Pearson, S. G., Fullagar, R., Chase, B. M., Houston, J., Atchison, J., White, N. E., Bellgard, M. I., Clarke, E., Macphail, M., Gilbert, M Thomas P, Haile, James Seymour & Bunce, M., 14 Dec 2012, In: Quaternary Science Reviews. 58, p. 135-145 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
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High-throughput sequencing of core STR loci for forensic genetic investigations using the Roche Genome Sequencer FLX platform
Fordyce, S. L., Avila Arcos, M. D. C., Rockenbauer, Eszter, Børsting, Claus, Frank-Hansen, R., Petersen, J. F. T., Willerslev, Eske, Hansen, Anders Johannes, Morling, Niels & Gilbert, M Thomas P, 1 Aug 2011, In: BioTechniques. 51, 2, p. 127-133 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
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High-throughput sequencing offers insight into mechanisms of resource partitioning in cryptic bat species
Razgour, O., Clare, E. L., Zeale, M. R. K., Hanmer, J., Schnell, I. B., Rasmussen, M., Gilbert, M Thomas P & Jones, G., 2011, In: Ecology and Evolution. 1, 4, p. 556-570 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Historic Sampling of a Vanishing Beast: Population Structure and Diversity in the Black Rhinoceros
Sánchez-Barreiro, F., Westbury, Binia De Cahsan, Westbury, Michael Vincent, Sun, Xin, Margaryan, Ashot, Fontsere, Claudia, Bruford, M. W., Russo, I. M., Kalthoff, D. C., Sicheritz-Pontén, Thomas, Petersen, Bent, Dalén, L., KU, thw266, Marquès-Bonet, T., Gilbert, M Thomas P & Moodley, Y., 2023, In: Molecular Biology and Evolution. 40, 9, 19 p., msad180.Research output: Contribution to journal › Journal article › Research › peer-review
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Historical isolation facilitates species radiation by sexual selection: Insights from Chorthippus grasshoppers
Nolen, Z. J., Yildirim, B., Irisarri, I., Liu, Shanlin, Groot Crego, C., Amby, Daniel Buchvaldt, Mayer, F., Gilbert, M Thomas P & Pereira, R. J., 2020, In: Molecular Ecology. 29, 24, p. 4985-5002Research output: Contribution to journal › Journal article › Research › peer-review
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Historical mammal extinction on Christmas Island (Indian Ocean) correlates with introduced infectious disease
Wyatt, K. B., Campos, P. F., Gilbert, M Thomas P, Kolokotronis, S., Hynes, W. H., DeSalle, R., Daszak, P., MacPhee, R. D. E. & Greenwood, A. D., 2008, In: PLoS ONE. 3, 11, p. e3602Research output: Contribution to journal › Journal article › Research › peer-review
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Historical population declines prompted significant genomic erosion in the northern and southern white rhinoceros (Ceratotherium simum)
Sánchez-Barreiro, F., Gopalakrishnan, Shyam, Ramos Madrigal, Jazmin, Westbury, Michael Vincent, de Manuel, M., Margaryan, Ashot, Ciucani, M. M., Vieira, Filipe Garrett, Patramanis, Ioannis, Kalthoff, D. C., Timmons, Z., Sicheritz-Pontén, Thomas, Dalén, L., Ryder, O. A., KU, thw266, Marques-Bonet, T., Moodley, Y. & Gilbert, M Thomas P, 2021, In: Molecular Ecology. 30, 23, p. 6355-6369 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Holo-Omics: Integrated Host-Microbiota Multi-omics for Basic and Applied Biological Research
Jessen, Lasse Nyholm, Koziol, Adam Leslie, Marcos, S., Botnen, A. B., Aizpurua Arrieta, Ostaizka, Gopalakrishnan, Shyam, Limborg, Morten Tønsberg, Gilbert, M Thomas P & Alberdi, Antton, 2020, In: iScience. 23, 8, p. 1-16 101414.Research output: Contribution to journal › Review › Research › peer-review
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Hologenomic adaptations underlying the evolution of sanguivory in the common vampire bat
Zepeda Mendoza, M. L., Xiong, Z., Escalera-Zamudio, M., Runge, A. K. W., Thézé, J., Streicker, D., Frank, H. K., Loza-Rubio, E., Liu, S., Ryder, O. A., Castruita, J. A. S., Katzourakis, A., Pacheco, G. A., Taboada, B., Löber, U., Pybus, O. G., Li, Y., Rojas-Anaya, E., Bohmann, K., Carmona Baez, A. & 9 others, , 2018, In: Nature Ecology & Evolution. 2, 4, p. 659-668 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Host-derived population genomics data provides insights into bacterial and diatom composition of the killer whale skin
Hooper, R., Brealey, J. C., van der Valk, T., Alberdi, Antton, Durban, J. W., Fearnbach, H., Robertson, K. M., Baird, R. W., Bradley Hanson, M., Wade, P., Gilbert, M Thomas P, Morin, P. A., Wolf, J. B. W., Foote, A. D. & Guschanski, K., 2019, In: Molecular Ecology. 28, 2, p. 484-502 19 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Host-gut microbiota interactions shape parasite infections in farmed Atlantic salmon
Brealey, Jaelle, Kodama, M., Rasmussen, Jacob Agerbo, Hansen, Søren Blikdal, Santos-Bay, Luisa, Lecaudey, L. A., Hansen, M., Fjære, E., Myrmel, L. S., Madsen, L., Bernhard, A., Sveier, H., Kristiansen, Karsten, Gilbert, M Thomas P, Martin, M. D. & Limborg, Morten Tønsberg, 2024, In: mSystems. 9, 2, 29 p., e01043-23.Research output: Contribution to journal › Journal article › Research › peer-review
- E-pub ahead of print
How ancient RNA survives and what we can learn from it
Friedländer, M. R. & Gilbert, M Thomas P, 2024, (E-pub ahead of print) In: Nature Reviews Molecular Cell Biology. 2 p.Research output: Contribution to journal › Comment/debate › Research › peer-review
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Hvad er hologenomik?
Spile, M. B., Gilbert, M Thomas P & Noer, Christina, 2023, In: Kaskelot. 245, p. 12-18Research output: Contribution to journal › Journal article › Communication
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Hybridization capture using short PCR products enriches small genomes by Capturing Flanking Sequences (CapFlank)
Tsangaras, K., Wales, N., Sicheritz-Pontén, T., Rasmussen, Simon, Michaux, J., Ishida, Y., Morand, S., Kampmann, Marie-Louise, Gilbert, M Thomas P & Greenwood, A. D., 2014, In: PLoS ONE. 9, 10, 10 p., e109101.Research output: Contribution to journal › Journal article › Research › peer-review
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Identification of African swine fever virus transcription within peripheral blood mononuclear cells of acutely infected pigs
Olesen, A. S., Kodama, M., Lohse, L., Accensi, F., Rasmussen, T. B., Lazov, Christina Marie, Limborg, Morten Tønsberg, Gilbert, M Thomas P, Bøtner, A. & Belsham, Graham John, 2021, In: Viruses. 13, 11, 2333.Research output: Contribution to journal › Journal article › Research › peer-review
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Identification of animal species in skin clothing from museum collections
Schmidt, A. L., Gilbert, M Thomas P, Cappellini, Enrico & Olsen, Jesper Velgaard, 2011. 8 p.Research output: Contribution to conference › Paper › Research › peer-review
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Identification of microsatellites from an extinct moa species using high-throughput (454) sequence data
Allentoft, Morten Erik, Schuster, S. C., Holdaway, R. N., Hale, M. L., McLay, E., Oskam, C. L., Gilbert, M Thomas P, Spencer, P., Willerslev, Eske & Bunce, M., 2009, In: BioTechniques. 46, 3, p. 195-200 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Improved Genome Assembly and Annotation for the Rock Pigeon (Columba livia)
Holt, C., Campbell, M., Keays, D. A., Edelman, N., Kapusta, A., Maclary, E., Domyan, E. T., Suh, A., Warren, W. C., Yandell, M., Gilbert, M Thomas P & Shapiro, M. D., 2018, In: G3: Genes, Genomes, Genetics (Bethesda). 8, 5, p. 1391-1398 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Improving the performance of true single molecule sequencing for ancient DNA
Ginolhac, A., Mouatt, J. T. V., Stenderup, Jesper Tandberg, Rasmussen, M., Stiller, M., Shapiro, B., Zazula, G., Froese, D., Steinmann, K. E., Thompson, J. F., Al-Rasheid, K. A. S., Gilbert, M Thomas P, Willerslev, Eske & Orlando, L. A. A., 10 May 2012, In: BMC Genomics. 13, 14 p., 177.Research output: Contribution to journal › Journal article › Research › peer-review
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Insights into the processes behind the contamination of degraded human teeth and bone samples with exogenous sources of DNA
Gilbert, M Thomas P, Hansen, Anders Johannes, Willerslev, Eske, Turner-Walker, G. & Collins, M., 2006, In: International Journal of Osteoarchaeology. 16, 2, p. 156-164Research output: Contribution to journal › Journal article › Research › peer-review
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Intestinal epigenotype of Atlantic salmon (Salmo salar) associates with tenacibaculosis and gut microbiota composition
Hansen, Søren Blikdal, Bozzi, D., Mak, Sarah Siu Tze, Clausen, C. G., Nielsen, Tue Kjærgaard, Kodama, M., Hansen, Lars Hestbjerg, Gilbert, M Thomas P & Limborg, Morten Tønsberg, 2023, In: Genomics. 115, 3, 9 p., 110629.Research output: Contribution to journal › Journal article › Research › peer-review
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Intraspecific phylogenetic analysis of Siberian woolly mammoths using complete mitochondrial genomes
Gilbert, M. T. P., Drautz, D. I., Lesk, A. M., Ho, S. Y. W., Qi, J., Ratan, A., Hsu, C-H., Sher, A., Dalén, L., Götherström, A., Tomsho, L. P., Rendulic, S., Packard, M., Campos, P. F., Kuznetsova, T. V., Shidlovskiy, F., Tikhonov, A., Willerslev, E., Iacumin, P., Buigues, B. & 13 others, , 2008, In: Proceedings of the National Academy of Science of the United States of America. 105, 24, p. 8327-32 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Investigating the potential use of environmental DNA (eDNA) for genetic monitoring of marine mammals
Foote, A. D., Thomsen, P. F., Sveegaard, S., Wahlberg, M., Kielgast, J., Kyhn, L. A., Salling, A. B., Galatius, A., Orlando, L. A. A. & Gilbert, M Thomas P, 29 Aug 2012, In: PLoS ONE. 7, 8, 6 p., e41781.Research output: Contribution to journal › Journal article › Research › peer-review
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Islands in the ice: detecting past vegetation on Greenlandic nunataks using historical records and sedimentary ancient DNA Meta-barcoding
Jørgensen, Tina, Kjær, Kurt H., Haile, James Seymour, Rasmussen, M., Boessenkool, S., Andersen, K., Coissac, E., Taberlet, P., Brochmann, C., Orlando, L. A. A., Gilbert, M Thomas P & Willerslev, Eske, 2012, In: Molecular Ecology. 21, 8, p. 1980-1988 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Killer whale genomes reveal a complex history of recurrent admixture and vicariance
Foote, A. D., Martin, M. D., Louis, M., Pacheco, G., Robertson, K. M., Sinding, M-H. S., Amaral, A. R., Baird, R. W., Baker, C. S., Ballance, L., Barlow, J., Brownlow, A., Collins, T., Constantine, R., Dabin, W., Dalla Rosa, L., Davison, N. J., Durban, J. W., Esteban, R., Ferguson, S. H. & 15 others, , 2019, In: Molecular Ecology. 28, 14, p. 3427-3444 18 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Kouprey (Bos sauveli) genomes unveil polytomic origin of wild Asian Bos
Sinding, M. S., Ciucani, M. M., Ramos Madrigal, Jazmin, Carmagnini, A., Rasmussen, Jacob Agerbo, Feng, S., Chen, G., Vieira, Filipe Garrett, Mattiangeli, V., Ganjoo, R. K., Larson, G., Sicheritz-Pontén, Thomas, Petersen, Bent, Frantz, L., Gilbert, M Thomas P & Bradley, D. G., 2021, In: iScience. 24, 11, 18 p., 103226.Research output: Contribution to journal › Journal article › Research › peer-review
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Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits
Chen, L., Qin, Q., Jiang, Y., Wang, K., Lin, Z., Li, Z., Bibi, F., Yang, Y., Wang, J., Nie, W., Su, W., Liu, G., Li, Q., Fu, W., Pan, X., Liu, C., Yang, J., Zhang, C., Yin, Y., Wang, Y. & 32 others, , 2019, In: Science. 364, 6446, p. 1152-Research output: Contribution to journal › Journal article › Research › peer-review
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Late Pleistocene stickleback environmental genomes reveal the chronology of freshwater adaptation
Laine, J., Mak, Sarah Siu Tze, Martins, N. F. G., Chen, Xihan, Gilbert, M Thomas P, Jones, F. C., Pedersen, Mikkel Winther, Romundset, A. & Foote, A. D., 2024, In: Current Biology. 34, 5, p. 1142-1147 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Leech blood-meal invertebrate-derived DNA reveals differences in Bornean mammal diversity across habitats
Drinkwater, R., Jucker, T., Potter, J. H. T., Swinfield, T., Coomes, D. A., Slade, E. M., Gilbert, M Thomas P, Lewis, O. T., Bernard, H., Struebig, M. J., Clare, E. L. & Rossiter, S. J., 2021, In: Molecular Ecology. 30, 13, p. 3299-3312 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Leeches as a source of mammalian viral DNA and RNA - a study in medicinal leeches
Kampmann, Marie-Louise, Schnell, I. B., Jensen, R. H., Axtner, J., Sander, Adam F. , Hansen, Anders Johannes, Bertelsen, Mads Frost, Greenwood, A. D., Gilbert, M Thomas P & Wilting, A., 2017, In: European Journal of Wildlife Research. 63, 6 p., 36.Research output: Contribution to journal › Letter › Research › peer-review
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Long-term RNA persistence in postmortem contexts
Fordyce, S. L., Kampmann, Marie-Louise, van Doorn, N. L. & Gilbert, M Thomas P, 23 Apr 2013, In: Investigative Genetics. 4, 1, 7 p., 7.Research output: Contribution to journal › Journal article › Research › peer-review
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Low frequency of paleoviral infiltration across the avian phylogeny
Cui, J., Zhao, W., Huang, Z., Jarvis, E. D., Gilbert, M Thomas P, Walker, P. J., Holmes, E. C. & KU, thw266, 2014, In: Genome Biology (Online Edition). 15, 12, 13 p., 539.Research output: Contribution to journal › Journal article › Research › peer-review
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Macroevolution of complex retroviruses
Katzourakis, A., Gifford, R. J., Tristem, M., Gilbert, M Thomas P & Pybus, O. G., 2009, In: Science. 325, 5947, p. 1512 1 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Mammal mitogenomics from invertebrate-derived DNA
Danabalan, R., Merkel, K., Schnell, I. B., Arandjelovic, M., Boesch, C., Brazzola, G., Dieguez, P., Dupain, J., Kambale-Vyalengerera, M., Kühl, H. S., Hoffmann, C., Lapuente, J., Thinh, V. N., Zimmermann, F., Leendertz, F. H., Gilbert, M Thomas P, Roos, C., Mazzoni, C., Gogarten, J. F. & Calvignac-Spencer, S., 2023, In: Environmental DNA. 5, 5, p. 1004-1015 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Marine turtle mitogenome phylogenetics and evolution
Duchene, S., Frey, A., Alfaro-Núñez, L. A., Dutton, P. H., Gilbert, M Thomas P & Morin, P. A., 1 Oct 2012, In: Molecular Phylogenetics and Evolution. 65, 1, p. 241-250 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Meta-barcoding of 'dirt' DNA from soil reflects vertebrate biodiversity
Andersen, K., Bird, K. L., Rasmussen, M., Haile, James Seymour, Breuning-Madsen, H., Kjær, Kurt H., Orlando, L. A. A., Gilbert, M Thomas P & Willerslev, Eske, 2012, In: Molecular Ecology. 21, 8, p. 1966-1979 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Mind the gut: genomic insights to population divergence and gut microbial composition of two marine keystone species
Fietz, K., Hintze, C. O. R., Skovrind, Mikkel, Nielsen, Tue Kjærgaard, Limborg, Morten Tønsberg, Krag, M. A., Palsboll, P. J., Hansen, L. H., Møller, Peter Rask & Gilbert, M Thomas P, 2018, In: Microbiome. 6, 16 p., 82.Research output: Contribution to journal › Journal article › Research › peer-review
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Minimally destructive DNA extraction from archaeological artefacts made from whale baleen
Sinding, Mikkel Holger Strander, Gilbert, M Thomas P, Grønnow, B., Gulløv, H. C., Toft, P. A. & Foote, A. D., 1 Dec 2012, In: Journal of Archaeological Science. 39, 12, p. 3750-3753 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Mitochondrial DNA from the eradicated European Plasmodium vivax and P. falciparum from 70-year-old slides from the Ebro Delta in Spain
Gelabert, P., Sandoval-Velasco, Marcela, Olalde, I., Fregel, R., Rieux, A., Escosa, R., Aranda, C., Paaijmans, K., Mueller, I., Gilbert, M Thomas P & Lalueza-Fox, C., 2016, In: National Academy of Sciences. Proceedings. 113, 41, p. 11495-11500 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Mitochondrial genome diversity and population structure of the giant squid Architeuthis: genetics sheds new light on one of the most enigmatic marine species
Winkelmann, I. E. H., Campos, P., Strugnell, J., Cherel, Y., Smith, P. J., Kubodera, T., Allcock, L., Kampmann, Marie-Louise, Schroeder, Hannes, Guerra, A., Norman, M., Finn, J., Ingrao, D., Clarke, M. & Gilbert, M Thomas P, 22 May 2013, In: Proceedings of the Royal Society B: Biological Sciences. 280, 1759, 9 p., 20130273.Research output: Contribution to journal › Journal article › Research › peer-review
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Mitochondrial genomes of Danish vertebrate species generated for the national DNA reference database, DNAmark
Margaryan, Ashot, Noer, Christina, Richter, S. R., Restrup, M. E., Bülow‐hansen, J. L., Leerhøi, Frederik, Arfaoui, Emilia Marie Rolander, Gopalakrishnan, Shyam, Carøe, C., Gilbert, M Thomas P & Bohmann, Kristine, 2021, In: Environmental DNA. 3, 2, p. 472-480Research output: Contribution to journal › Journal article › Research › peer-review
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Mitogenome sequencing reveals shallow evolutionary histories and recent divergence time between morphologically and ecologically distinct European whitefish (Coregonus spp.)
Jacobsen, L. M. W., Hansen, M. M., Orlando, L. A. A., Bekkevold, D., Bernatchez, L., Willerslev, Eske & Gilbert, M Thomas P, 2012, In: Molecular Ecology. 21, 11, p. 2727-2742 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Mitogenomic analyses from ancient DNA
Paijmans, J. L. A., Gilbert, M Thomas P & Hofreiter, M., Nov 2013, In: Molecular Phylogenetics and Evolution. 69, 2, p. 404-416 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Mitogenomic evidence of close relationships between New Zealand's extinct giant raptors and small-sized Australian sister-taxa
Knapp, M., Thomas, J. E., Haile, James Seymour, Prost, S., Ho, S. Y. W., Dussex, N., Cameron-Christie, S., Kardailsky, O., Barnett, R., Bunce, M., Gilbert, M Thomas P & Scofield, R. P., 2019, In: Molecular Phylogenetics and Evolution. 134, p. 122-128Research output: Contribution to journal › Journal article › Research › peer-review
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Mitogenomic insights into a recently described and rarely observed killer whale morphotype
Foote, A. D., Morin, P., Pitman, R. L., Avila Arcos, M. D. C., Durban, J. W., Helden, A. V., Sinding, Mikkel Holger Strander & Gilbert, M Thomas P, Oct 2013, In: Polar Biology. 36, 10, p. 1519-1523 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Mitogenomic phylogenetic analyses of the Delphinidae with an emphasis on the Globicephalinae
Mouatt, J. T. V., Ho, S. Y. W., Foote, A. D., Morin, P. A., Kreb, D., Krützen, M., Parra, G. J., Robertson, K. M., de Stephanis, R., Verborgh, P., Willerslev, Eske, Orlando, L. A. A. & Gilbert, M Thomas P, 1 Jan 2011, In: BMC Evolutionary Biology. 11, 10 p., 65.Research output: Contribution to journal › Journal article › Research › peer-review
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MobiSeq: De novo SNP discovery in model and non-model species through sequencing the flanking region of transposable elements
Rey de la Iglesia, Alba, Gopalakrishan, S., Carøe, C., Alquezar-Planas, D. E., Nielsen, A. A., Röder, T., Pedersen, Lene Bruhn, Næsborg-Nielsen, C., Sinding, Mikkel Holger Strander, Rath, Martin Fredensborg, Li, Z., Petersen, Bent, Gilbert, M Thomas P, Bunce, M., Mourier, T. & Hansen, Anders Johannes, 2019, In: Molecular Ecology Resources. 19, 2, p. 512-525 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Modern Siberian dog ancestry was shaped by several thousand years of Eurasian-wide trade and human dispersal
Feuerborn, T. R., Carmagnini, A., Losey, R. J., Nomokonova, T., Askeyev, A., Askeyev, I., Askeyev, O., Antipina, E. E., Appelt, M., Bachura, O. P., Beglane, F., Bradley, D. G., Daly, K. G., Gopalakrishnan, S., Gregersen, K. M., Guo, C., Gusev, A. V., Jones, C., Kosintsev, P. A., Kuzmin, Y. V. & 17 others, , 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 39, e2100338118.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Molecular clocks indicate turnover and diversification of modern coleoid cephalopods during the Mesozoic Marine Revolution
Tanner, A. R., Fuchs, D., Winkelmann, I. E. H., Gilbert, M Thomas P, Pankey, M. S., Oliveira Ribeiro, Â. M., Kocot, K. M., Halanych, K. M., Oakley, T. H., Rodrigues da Fonseca, Rute Andreia, Pisani, D. & Vinther, J., 15 Mar 2017, In: Proceedings of the Royal Society B: Biological Sciences. 284, 1850, 7 p., 20162818.Research output: Contribution to journal › Journal article › Research › peer-review
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Molecular diet analysis of two African free-tailed bats (Molossidae) using high throughput sequencing
Bohmann, Kristine, Monadjem, A., Noer, Christina, Rasmussen, M., Zeale, M. R. K., Clare, E., Jones, G., Willerslev, Eske & Gilbert, M Thomas P, 2011, In: PLoS ONE. 6, 6, p. e21441 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Molecular identification and phylogenetic analysis of a Callosciurus notatus complete mitogenome from Peninsular Malaysia
Jahari, P. N. S., Mohd Azman, S., Munian, K., Ahmad Ruzman, N. H., Shamsir, M. S., Richter, S. R., Gilbert, M Thomas P & Mohd Salleh, F., 2020, In: Mitochondrial DNA Part B: Resources. 5, 3, p. 3022-3024 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Molecular identification of the extinct mountain goat, Oreamnos harringtoni (Bovidae)
Campos, P., Willerslev, Eske, Mead, J., Hofreiter, M. & Gilbert, M Thomas P, 2010, In: Boreas. 39, 1, p. 18-23 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Molecular parallelisms between pigmentation in the avian iris and the integument of ectothermic vertebrates
Andrade, P., Gazda, M. A., Araújo, P. M., Afonso, S., Rasmussen, Jacob Agerbo, Marques, C. I., Lopes, R. J., Gilbert, M Thomas P & Carneiro, M., 2021, In: PLOS Genetics. 17, 2, 16 p., 1009404.Research output: Contribution to journal › Journal article › Research › peer-review
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Monitoring endangered freshwater biodiversity using environmental DNA
Thomsen, P. F., Kielgast, J., Iversen, Lars Lønsmann, Wiuf, C. H., Rasmussen, M., Gilbert, M Thomas P, Orlando, L. A. A. & Willerslev, Eske, 2012, In: Molecular Ecology. 21, 11, p. 2565-2573 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
More on contamination: the use of asymmetric molecular behavior to identify authentic ancient human DNA.
Malmström, H., Svensson, E. M., Gilbert, M Thomas P, Willerslev, Eske, Götherström, A. & Holmlund, G., 2007, In: Molecular Biology and Evolution. 24, 4, p. 998-1004 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Multi-omic detection of Mycobacterium leprae in archaeological human dental calculus
Fotaki, Anna Katerina, Denham, S. D., Mackie, Meaghan, Iraeta Orbegozo, Miren, Mylopotamitaki, Dorothea, Gopalakrishnan, Shyam, Sicheritz-Pontén, Thomas, Olsen, Jesper Velgaard, Cappellini, Enrico, KU, thw266, Christophersen, A., Gilbert, M Thomas P & Vågene, Åshild Joanne, 2020, In: Philosophical Transactions of the Royal Society B: Biological Sciences. 375, 1812, 10 p., 20190584.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Multi-omics and potential applications in wine production
Sirén, K., Mak, Sarah Siu Tze, Fischer, U., Hansen, Lars Hestbjerg & Gilbert, M Thomas P, 2019, In: Current Opinion in Biotechnology. 56, p. 172-178Research output: Contribution to journal › Review › Research › peer-review
- Published
Multidisciplinary medical identification of a French king's head (Henri IV)
Charlier, P., Huynh-Charlier, I., Poupon, J., Keyser, C., Lancelot, E., Favier, D., Vignal, J., Sorel, P., Chaillot, P. F., Boano, R., Grilletto, R., Delacourte, S., Duriez, J., Loublier, Y., Campos, P., Willerslev, Eske, Gilbert, M Thomas P, Eisenberg, L., Ludes, B. & de la Grandmaison, G. L., 2010, In: The BMJ. 341, p. c6805 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Multiplex PCR with minisequencing as an effective high-throughput SNP typing method for formalin-fixed tissue.
Gilbert, M Thomas P, Sanchez, J. J., Haselkorn, T., Jewell, L. D., Lucas, S. B., Van Marck, E., Børsting, Claus, Morling, Niels & Worobey, M., 2007, In: Electrophoresis. 28, 14, p. 2361-7 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Multiproxy evidence highlights a complex evolutionary legacy of maize in South America
Kistler, L., Maezumi, S. Y., Gregorio De Souza, J., Przelomska, N. A. S., Malaquias Costa, F., Smith, O., Loiselle, H., Ramos Madrigal, Jazmin, Wales, N., Ribeiro, E. R., Morrison, R. R., Grimaldo, C., Prous, A. P., Arriaza, B., Gilbert, M Thomas P, De Oliveira Freitas, F. & Allaby, R. G., 14 Dec 2018, In: Science. 362, 6420, p. 1309-1313Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Natural selection shaped the rise and fall of passenger pigeon genomic diversity
Murray, G. G. R., Soares, A. E. R., Novak, B. J., Schaefer, N. K., Cahill, J. A., Baker, A. J., Demboski, J. R., Doll, A., Rodrigues da Fonseca, R. A., Fulton, T. L., Gilbert, T., Heintzman, P. D., Letts, B., McIntosh, G., O'Connell, B. L., Peck, M., Pipes, M-L., Rice, E. S., Santos, K. M., Sohrweide, A. G. & 4 others, , 17 Nov 2017, In: Science. 358, 6365, p. 951-954 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Near-Random Distribution of Chromosome-Derived Circular DNA in the Condensed Genome of Pigeons and the Larger, More Repeat-Rich Human Genome
Møller, H. D., Ramos Madrigal, Jazmin, Prada Luengo, Inigo, Gilbert, M Thomas P & Regenberg, Birgitte, 2020, In: Genome Biology and Evolution. 12, 2, p. 3762-3777 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Near-complete genome sequencing of swine vesicular disease virus using the Roche GS FLX sequencing platform
Nielsen, S. C. A., Bruhn, C. A. W., Samaniego Castruita, J. A., Wadsworth, J., Knowles, N. J. & Gilbert, M Thomas P, 2014, In: PLOS ONE. 9, 5, 7 p., e97180.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
New insights on single-stranded versus double-stranded DNA library preparation for ancient DNA
Wales, N., Carøe, C., Sandoval-Velasco, Marcela, Gamba, C., Barnett, R., Samaniego Castruita, J. A., Ramos Madrigal, Jazmin, Orlando, L. A. A. & Gilbert, M Thomas P, 2015, In: BioTechniques. 59, 6, p. 368-371 4 p.Research output: Contribution to journal › Letter › Research › peer-review
- Published
No longer locally extinct? Tracing the origins of a lion (Panthera leo) living in Gabon
Barnett, R., Sinding, M. S., Vieira, Filipe Garrett, Mendoza, M. L. Z., Bonnet, M., Araldi, A., Kienast, I., Zambarda, A., Yamaguchi, N., Henschel, P. & Gilbert, M Thomas P, 2018, In: Conservation Genetics. 19, 3, p. 611-618 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
No proof that typhoid caused the Plague of Athens (a reply to Papagrigorakis et al.)
Shapiro, B., Rambaut, A. & Gilbert, M Thomas P, 2006, In: International Journal of Infectious Diseases. 10, 4, p. 334-335Research output: Contribution to journal › Journal article › Research › peer-review
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Non-destructive sampling of ancient insect DNA
Thomsen, P. F., Elias, S., Gilbert, M Thomas P, Haile, James Seymour, Munch, K., Kuzmina, S., Froese, D. G., Sher, A., Holdaway, R. N. & Willerslev, Eske, 2009, In: PLoS ONE. 4, 4, p. e5048Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Non-invasive surveys of mammalian viruses using environmental DNA
Alfano, N., Dayaram, A., Axtner, J., Tsangaras, K., Kampmann, Marie-Louise, Mohamed, A., Wong, S. T., Gilbert, M Thomas P, Wilting, A. & Greenwood, A. D., 2021, In: Methods in Ecology and Evolution. 12, 10, p. 1941-1952Research output: Contribution to journal › Journal article › Research › peer-review
Notes and comments: Long-term survival of ancient DNA in Egypt
Gilbert, M Thomas P, Barnes, I., Collins, Matthew James, Smith, C., Eklund, J., Goudsmit, J., Poinar, H. & Cooper, A., 2005, In: American Journal of Physical Anthropology. 128, 1, p. 110-114Research output: Contribution to journal › Comment/debate › Research › peer-review
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Novel strategies to improve chicken performance and welfare by unveiling host-microbiota interactions through hologenomics
Tous, N., Marcos, S., Goodarzi Boroojeni, F., Pérez de Rozas, A., Zentek, J., Estonba, A., Sandvang, D., Gilbert, M Thomas P, Esteve-Garcia, E., Finn, R., Alberdi, Antton & Tarradas, J., 2022, In: Frontiers in Physiology. 13, 14 p., 884925.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Odintifier - A computational method for identifying insertions of organellar origin from modern and ancient high-throughput sequencing data based on haplotype phasing
Samaniego Castruita, J. A., Zepeda Mendoza, M. L., Barnett, R., Wales, N. & Gilbert, M Thomas P, 2015, In: BMC Bioinformatics. 16, 13 p., 232.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Olfactory receptor subgenomes linked with broad ecological adaptations in sauropsida
Khan, I., Yang, Z., Maldonado, E., Li, C., KU, thw266, Gilbert, M Thomas P, Jarvis, E. D., O'Brien, S. J., Johnson, W. E. & Antunes, A., 2015, In: MOLECULAR BIOLOGY AND EVOLUTION . 32, 11, p. 2832-2843 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
On the origin and evolution of RNA editing in metazoans
Zhang, P., Zhu, Y., Guo, Q., Li, J., Zhan, X., Yu, H., Xie, N., Tan, H., Lundholm, Nina, Garcia-Cuetos, L., Martin, M. D., Subirats, M. A., Su, Y., Ruiz-Trillo, I., Martindale, M. Q., Yu, J., Gilbert, M Thomas P, KU, thw266 & Li, Q., 2023, In: Cell Reports. 42, 2, 22 p., 112112.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
One hundred twenty years of koala retrovirus evolution determined from museum skins
Avila Arcos, M. D. C., Ho, S. Y. W., Ishida, Y., Nikolaidis, N., Tsangaras, K., Hönig, K., Medina, R., Rasmussen, M., Fordyce, S. L., Calvignac-Spencer, S., Willerslev, Eske, Gilbert, M Thomas P, Helgen, K. M., Roca, A. L. & Greenwood, A. D., Feb 2013, In: Molecular Biology and Evolution. 30, 2, p. 299-304 6 p.Research output: Contribution to journal › Letter › Research › peer-review
- Published
Optimization of DNA recovery and amplification from non-carbonized archaeobotanical remains
Wales, N., Andersen, K., Cappellini, Enrico, Avila Arcos, M. D. C. & Gilbert, M Thomas P, 2014, In: PLOS ONE. 9, 1, 14 p., e86827.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Origins and genetic legacy of Neolithic farmers and hunter-gatherers in Europe
Skoglund, P., Malmström, H., Raghavan, M., Storå, J., Hall, P., Willerslev, Eske, Gilbert, M Thomas P, Götherström, A. & Jakobsson, M., 2012, In: Science. 336, 6080, p. 466-469 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Out of the Pacific and back again: insights into the matrilineal history of Pacific Killer whale ecotypes
Foote, A. D., Morin, P. A., Durban, J. W., Willerslev, Eske, Orlando, L. A. A. & Gilbert, M Thomas P, 2011, In: PLoS ONE. 6, 9, 7 p., e24980.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Palaeogenomic insights into the origins of French grapevine diversity
Ramos Madrigal, Jazmin, Runge, Anne Kathrine Wiborg, Bouby, L., Lacombe, T., Samaniego Castruita, J. A., Adam-Blondon, A., Figueiral, I., Hallavant, C., Schaal, C., Töpfer, R., Petersen, Bent, Sicheritz-Pontén, T., This, P., Bacilieri, R., Gilbert, M Thomas P & Wales, N., 2019, In: Nature Plants. 5, 6, p. 595-603 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Palaeogenomics of Extinct and Archaic Hominins
Gilbert, M Thomas P & Lalueza-Fox, C., 2023, Handbook of Archaeological Sciences. Pollard, M., Armitage, R. A. & Makarewicz, C. A. (eds.). 2 ed. Wiley-Interscience, Vol. 1. p. 647-656 10 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Paleo-eskimo mtDNA genome reveals matrilineal discontinuity in Greenland
Gilbert, M. T. P., Kivisild, T., Grønnow, B., Andersen, P. K., Metspalu, E., Reidla, M., Tamm, E., Axelsson, E., Götherström, A., Campos, P. F., Rasmussen, M., Metspalu, M., Higham, T. F. G., Schwenninger, J-L., Nathan, R., De Hoog, C-J., Koch, A., Møller, L. N., Andreasen, C., Meldgaard, M. & 3 others, , 2008, In: Science. 320, 5884, p. 1787-1789 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Paleogenomics of archaeic hominins
Lalueza-Fox, C. & Gilbert, M Thomas P, 2011, In: Current Biology. 21, 24, p. R1002-R1009 8 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Pan-genome Analysis of Ancient and Modern Salmonella enterica Demonstrates Genomic Stability of the Invasive Para C Lineage for Millennia
Zhou, Z., Lundstrøm, I. K. C., Tran-Dien, A., Duchêne, S., Alikhan, N., Sergeant, M. J., Langridge, G., Fotaki, Anna Katerina, Nair, S., Stenøien, H. K., Hamre, S. S., Casjens, S., Christophersen, A., Quince, C., Thomson, N. R., Weill, F., Ho, S. Y. W., Gilbert, M Thomas P & Achtman, M., 6 Aug 2018, In: Current Biology. 28, 15, p. 2420-2429 20 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Parallel adaptation of rabbit populations to myxoma virus
Alves, J. M., Carneiro, M., Cheng, J. Y., Matos, A. L. D., Rahman, M. M., Loog, L., Campos, P. F., Wales, N., Eriksson, A., Manica, A., Strive, T., Graham, S. C., Afonso, S., Bell, D. J., Belmont, L., Day, J. P., Fuller, S. J., Marchandeau, S., Palmer, W. J., Queney, G. & 8 others, , 2019, In: Science. 363, 6433Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Partial genetic turnover in Neandertals: continuity in the East and population replacement in the West
Dalén, L., Orlando, L. A. A., Shapiro, B., Brandström-Durling, M., Quam, R., Gilbert, M Thomas P, Díez Fernández-Lomana, J. C., Willerslev, Eske, Arsuaga, J. L. & Götherström, A., 2012, In: Molecular Biology and Evolution. 29, 8, p. 1893-1897 5 p.Research output: Contribution to journal › Letter › Research › peer-review
- Published
Pathogens and host immunity in the ancient human oral cavity
Warinner, C., Rodrigues, J. F. M., Vyas, R., Trachsel, C., Shved, N., Grossmann, J., Radini, A., Hancock, Y., Tito, R. Y., Fiddyment, S., Speller, C., Hendy, J., Charlton, S., Luder, H. U., Salazar-García, D. C., Eppler, E., Seiler, R., Hansen, L. H., Samaniego Castruita, J. A., Barkow-Oesterreicher, S. & 12 others, , 2014, In: Nature Genetics. 46, p. 336-344 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Penile density and globally used chemicals in Canadian and Greenland polar bears
Sonne, C., Dyck, M., Rigét, F. F., Jensen, J. B., Hyldstrup, L., Letcher, R. J., Gustavson, K., Gilbert, M Thomas P & Dietz, R., 2015, In: Environmental Research. 137, p. 287-291 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Persistence of the mitochondrial lineage responsible for the Irish potato famine in extant New World Phytophthora infestans
Martin, M. D., Ho, S. Y. W., Wales, N., Ristaino, J. B. & Gilbert, M Thomas P, 2014, In: Molecular Biology and Evolution. 31, 6, p. 1414-1420 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Phylogenomic analyses data of the avian phylogenomics project
Jarvis, E. D., Mirarab, S., Aberer, A. J., Li, B., Houde, P., Li, C., Ho, S. Y. W., Faircloth, B. C., Nabholz, B., Howard, J. T., Suh, A., Weber, C. C., Rodrigues da Fonseca, R. A., Alfaro Nuñez, L. A., Narula, N., Liu, L., Burt, D., Ellegren, H., Edwards, S. V., Stamatakis, A. & 7 others, , 2015, In: GigaScience. 4, 9 p., 4.Research output: Contribution to journal › Journal article › Research › peer-review
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Reconstructing genome evolution in historic samples of the Irish potato famine pathogen
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Deep sequencing of RNA from ancient maize kernels
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True single-molecule DNA sequencing of a pleistocene horse bone
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