Tom Gilbert

Tom Gilbert

Professor

Member of:

    ORCID: 0000-0002-5805-7195

    Publication year:
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    1 - 50 out of 440Page size: 50
    1. 2024
    2. Published

      Complexity of avian evolution revealed by family-level genomes

      Stiller, J., Feng, S., Chowdhury, A-A., Rivas-González, I., Duchêne, D. A., Fang, Q., Deng, Y., Kozlov, A., Stamatakis, A., Claramunt, S., Nguyen, J. M. T., Ho, S. Y. W., Faircloth, B. C., Haag, J., Houde, P., Cracraft, J., Balaban, M., Mai, U., Chen, G., Gao, R. & 32 others, Zhou, C., Xie, Y., Huang, Z., Cao, Z., Yan, Z., Ogilvie, H. A., Nakhleh, L., Lindow, Bent Erik Kramer, Morel, B., Fjeldså, Jon, Hosner, Peter Andrew, da Fonseca, R. R., Petersen, Bent, Tobias, J. A., Székely, T., Kennedy, J. D., Reeve, A. H., Liker, A., Stervander, M., Antunes, A., Tietze, D. T., Bertelsen, Mads, Lei, F., Rahbek, Carsten, Graves, G. R., Schierup, M. H., Warnow, T., Braun, E. L., Gilbert, M Thomas P, Jarvis, E. D., Mirarab, S. & KU, thw266, 1 Apr 2024, In: Nature.

      Research output: Contribution to journal › Journal article › Research › peer-review

    3. Published

      Exploring the microbial diversity of novel misos with metagenomics

      Kothe, C. I., Rasmussen, Jacob Agerbo, Mak, Sarah Siu Tze, Gilbert, M Thomas P & Evans, J., 2024, In: Food Microbiology. 117, 9 p., 104372.

      Research output: Contribution to journal › Journal article › Research › peer-review

    4. E-pub ahead of print

      Field and laboratory guidelines for reliable bioinformatic and statistical analysis of bacterial shotgun metagenomic data

      Aizpurua Arrieta, Ostaizka, Dunn, Rob, Hansen, Lars Hestbjerg, Gilbert, M Thomas P & Alberdi, Antton, 2024, (E-pub ahead of print) In: Critical Reviews in Biotechnology.

      Research output: Contribution to journal › Review › Research › peer-review

    5. Published

      Host-gut microbiota interactions shape parasite infections in farmed Atlantic salmon

      Brealey, Jaelle, Kodama, M., Rasmussen, Jacob Agerbo, Hansen, Søren Blikdal, Santos-Bay, Luisa, Lecaudey, L. A., Hansen, M., Fjære, E., Myrmel, L. S., Madsen, L., Bernhard, A., Sveier, H., Kristiansen, Karsten, Gilbert, M Thomas P, Martin, M. D. & Limborg, Morten Tønsberg, 2024, In: mSystems. 9, 2, 29 p., e01043-23.

      Research output: Contribution to journal › Journal article › Research › peer-review

    6. 2023
    7. Published

      A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants

      Rice, E. S., Alberdi, A., Alfieri, J., Athrey, G., Balacco, J. R., Bardou, P., Blackmon, H., Charles, M., Cheng, H. H., Fedrigo, O., Fiddaman, S. R., Formenti, G., Frantz, L. A. F., Gilbert, M. T. P., Hearn, C. J., Jarvis, E. D., Klopp, C., Marcos, S., Mason, A. S., Velez-Irizarry, D. & 2 others, Xu, L. & Warren, W. C., 2023, In: BMC Biology. 21, 17 p., 267.

      Research output: Contribution to journal › Journal article › Research › peer-review

    8. Published

      A simplified protocol for DNA extraction from FTA cards for faecal microbiome studies

      Botnen, A. B., Bjørnsen, Mads Bjørn, Alberdi, Antton, Gilbert, M Thomas P & Aizpurua Arrieta, Ostaizka, 2023, In: Heliyon. 9, 1, 10 p., e12861.

      Research output: Contribution to journal › Journal article › Research › peer-review

    9. Published

      Ancient DNA from a lost Negev Highlands desert grape reveals a Late Antiquity wine lineage

      Cohen, P., Bacilieri, R., Ramos Madrigal, Jazmin, Privman, E., Boaretto, E., Weber, A., Fuks, D., Weiss, E., Erickson-Gini, T., Bucking, S., Tepper, Y., Cvikel, D., Schmidt, J., Gilbert, M Thomas P, Wales, N., Bar-Oz, G. & Meiri, M., 2023, In: PNAS. 120, 17, 8 p., e2213563120.

      Research output: Contribution to journal › Journal article › Research › peer-review

    10. Published

      Ancient DNA reveals genetic admixture in China during tiger evolution

      Sun, X., Liu, Y. C., Tiunov, M. P., Gimranov, D. O., Zhuang, Y., Han, Y., Driscoll, C. A., Pang, Y., Li, C., Pan, Y., Velasco, M. S., Gopalakrishnan, S., Yang, R. Z., Li, B. G., Jin, K., Xu, X., Uphyrkina, O., Huang, Y., Wu, X. H., Gilbert, M. T. P. & 3 others, O’Brien, S. J., Yamaguchi, N. & Luo, S., 2023, In: Nature Ecology and Evolution. 7, 11, p. 1914-1929 29 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    11. Published

      Assessing the genetic composition of cotton-top tamarins (Saguinus oedipus) before sweeping anthropogenic impact

      Rasmussen, Linett, Fontsere, Claudia, Soto-Calderón, I. D., Guillen, R., Savage, A., Hansen, Anders Johannes, Hvilsom, C. & Gilbert, M Thomas P, 2023, In: Molecular Ecology. 32, 20, p. 5514-5527 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    12. Published

      Changes in the functional diversity of modern bird species over the last million years

      Germain, Ryan Ross, Feng, S., Buffan, L., Carmona, C. P., Chen, G., Graves, G. R., Tobias, J. A., Rahbek, Carsten, Lei, F., Fjeldså, Jon, Hosner, Peter Andrew, Gilbert, M Thomas P, Zhang, G. & Nogues, David Bravo, 2023, In: PNAS. 120, 7, 9 p., e2201945119.

      Research output: Contribution to journal › Journal article › Research › peer-review

    13. Published

      Co-diversification of an intestinal Mycoplasma and its salmonid host

      Rasmussen, Jacob Agerbo, Kiilerich, P., Madhun, A. S., Waagbø, R., Lock, E. J. R., Madsen, L., Gilbert, M Thomas P, Kristiansen, Karsten & Limborg, Morten Tønsberg, 2023, In: ISME Journal. 17, 5, p. 682-692 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    14. Published

      Conservation implications of elucidating the Korean wolf taxonomic ambiguity through whole-genome sequencing

      Hernández-Alonso, G., Ramos-Madrigal, J., Sun, X., Scharff-Olsen, C. H., Sinding, M. H. S., Martins, N. F., Ciucani, M. M., Mak, S. S. T., Lanigan, L. T., Clausen, C. G., Bhak, J., Jeon, S., Kim, C., Eo, K. Y., Cho, S. H., Boldgiv, B., Gantulga, G., Unudbayasgalan, Z., Kosintsev, P. A., Stenøien, H. K. & 2 others, Gilbert, M Thomas P & Gopalakrishnan, Shyam, 2023, In: Ecology and Evolution. 13, 8, 15 p., e10404.

      Research output: Contribution to journal › Journal article › Research › peer-review

    15. Published

      Evolution of the germline mutation rate across vertebrates

      Bergeron, Lucie Adrienne, Besenbacher, S., Zheng, J., Li, P., Bertelsen, Mads Frost, Quintard, B., Hoffman, J. I., Li, Z., Leger, J. S., Shao, C., Stiller, Josefin, Gilbert, M Thomas P, Schierup, M. H. & KU, thw266, 2023, In: Nature. 615, p. 285-291

      Research output: Contribution to journal › Journal article › Research › peer-review

    16. Published

      Future-proofing environmental DNA and trait-based predictions of food webs

      Pereira, Catia Lucio, Ersoy, Z., Gilbert, M Thomas P, Gravel, D., Araújo, M. B. & Matias, M. G., 2023, In: BioScience. 73, 12, p. 862-878 17 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    17. Published

      Genomic diversity and differentiation between island and mainland populations of white-tailed eagles (Haliaeetus albicilla)

      Hansen, C. C. R., Láruson, Á. J., Rasmussen, Jacob Agerbo, Ballesteros, J. A. C., Sinding, Mikkel Holger Strander, Hallgrimsson, G. T., von Schmalensee, M., Stefansson, R. A., Skarphédinsson, K. H., Labansen, A. L., Leivits, M., Sonne, C., Dietz, R., Skelmose, K., Boertmann, D., Eulaers, I., Martin, M. D., Helgason, A. S., Gilbert, M Thomas P & Pálsson, S., 2023, In: Molecular Ecology. 32, 8, p. 1925-1942 18 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    18. Published

      Genomics of adaptive evolution in the woolly mammoth

      Díez-del-Molino, D., Dehasque, M., Chacón-Duque, J. C., Chrzanová Pecnerová, Patrícia, Tikhonov, A., Protopopov, A., Plotnikov, V., Kanellidou, F., Nikolskiy, P., Mortensen, P., Danilov, G. K., Vartanyan, S., Gilbert, M Thomas P, Lister, A. M., Heintzman, P. D., van der Valk, T. & Dalén, L., 2023, In: Current Biology. 33, 9, 17 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    19. Published

      Historic Sampling of a Vanishing Beast: Population Structure and Diversity in the Black Rhinoceros

      Sánchez-Barreiro, F., Westbury, Binia De Cahsan, Westbury, Michael Vincent, Sun, Xin, Margaryan, Ashot, Fontsere, Claudia, Bruford, M. W., Russo, I. M., Kalthoff, D. C., Sicheritz-Pontén, Thomas, Petersen, Bent, Dalén, L., KU, thw266, Marquès-Bonet, T., Gilbert, M Thomas P & Moodley, Y., 2023, In: Molecular Biology and Evolution. 40, 9, 19 p., msad180.

      Research output: Contribution to journal › Journal article › Research › peer-review

    20. Published

      Hvad er hologenomik?

      Spile, M. B., Gilbert, M Thomas P & Noer, Christina, 2023, In: Kaskelot. 245, p. 12-18

      Research output: Contribution to journal › Journal article › Communication

    21. Published

      Intestinal epigenotype of Atlantic salmon (Salmo salar) associates with tenacibaculosis and gut microbiota composition

      Hansen, Søren Blikdal, Bozzi, D., Mak, Sarah Siu Tze, Clausen, C. G., Nielsen, Tue Kjærgaard, Kodama, M., Hansen, Lars Hestbjerg, Gilbert, M Thomas P & Limborg, Morten Tønsberg, 2023, In: Genomics. 115, 3, 9 p., 110629.

      Research output: Contribution to journal › Journal article › Research › peer-review

    22. Published

      Mammal mitogenomics from invertebrate-derived DNA

      Danabalan, R., Merkel, K., Schnell, I. B., Arandjelovic, M., Boesch, C., Brazzola, G., Dieguez, P., Dupain, J., Kambale-Vyalengerera, M., Kühl, H. S., Hoffmann, C., Lapuente, J., Thinh, V. N., Zimmermann, F., Leendertz, F. H., Gilbert, M Thomas P, Roos, C., Mazzoni, C., Gogarten, J. F. & Calvignac-Spencer, S., 2023, In: Environmental DNA. 5, 5, p. 1004-1015 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    23. Published

      On the origin and evolution of RNA editing in metazoans

      Zhang, P., Zhu, Y., Guo, Q., Li, J., Zhan, X., Yu, H., Xie, N., Tan, H., Lundholm, Nina, Garcia-Cuetos, L., Martin, M. D., Subirats, M. A., Su, Y., Ruiz-Trillo, I., Martindale, M. Q., Yu, J., Gilbert, M Thomas P, KU, thw266 & Li, Q., 2023, In: Cell Reports. 42, 2, 22 p., 112112.

      Research output: Contribution to journal › Journal article › Research › peer-review

    24. Published

      Palaeogenomics of Extinct and Archaic Hominins

      Gilbert, M Thomas P & Lalueza-Fox, C., 2023, Handbook of Archaeological Sciences. Pollard, M., Armitage, R. A. & Makarewicz, C. A. (eds.). 2 ed. Wiley-Interscience, Vol. 1. p. 647-656 10 p.

      Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

    25. Published

      Redefining the Evolutionary History of the Rock Dove, Columba livia, Using Whole Genome Sequences

      Hernández Alonso, Germán, Ramos Madrigal, Jazmin, van Grouw, H., Ciucani, Marta Maria, Cavill, Emily Louisa, Sinding, Mikkel Holger Strander, Gopalakrishnan, Shyam, Antunes Pacheco, George & Gilbert, M Thomas P, 2023, In: Molecular Biology and Evolution. 40, 11, 17 p., msad243.

      Research output: Contribution to journal › Journal article › Research › peer-review

    26. Published

      Species-specific traits mediate avian demographic responses under past climate change

      Germain, Ryan Ross, Feng, S., Chen, G., Graves, G. R., Tobias, J. A., Rahbek, Carsten, Lei, F., Fjeldså, Jon, Hosner, Peter Andrew, Gilbert, M Thomas P, KU, thw266 & Nogues, David Bravo, 2023, In: Nature Ecology and Evolution. 7, 6, p. 862-872 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    27. Published

      The ancestry and geographical origins of St Helena's liberated Africans

      Sandoval-Velasco, Marcela, Jagadeesan, A., Ramos Madrigal, Jazmin, Ávila-Arcos, M. C., Fortes-Lima, C. A., Watson, J., Johannesdóttir, E., Cruz-Dávalos, D. I., Gopalakrishnan, Shyam, Moreno Mayar, J. Víctor, Niemann, Jonas, Renaud, G., Brown, K. A. R., Bennett, H., Pearson, A., Helgason, A., Gilbert, M Thomas P & Schroeder, Hannes, 2023, In: American Journal of Human Genetics. 110, 9, p. 1590-1599 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    28. Published

      The extinct Sicilian wolf shows a complex history of isolation and admixture with ancient dogs

      Ciucani, M. M., Ramos-Madrigal, J., Hernández-Alonso, G., Carmagnini, A., Aninta, S. G., Sun, X., Scharff-Olsen, C. H., Lanigan, L. T., Fracasso, I., Clausen, C. G., Aspi, J., Kojola, I., Baltrūnaitė, L., Balčiauskas, L., Moore, J., Åkesson, M., Saarma, U., Hindrikson, M., Hulva, P., Bolfíková, B. Č. & 19 others, Nowak, C., Godinho, R., Smith, S., Paule, L., Nowak, S., Mysłajek, R. W., Lo Brutto, S., Ciucci, P., Boitani, L., Vernesi, C., Stenøien, H. K., Smith, O., Frantz, L., Rossi, L., Angelici, F. M., Cilli, E., Sinding, Mikkel Holger Strander, Gilbert, M Thomas P & Gopalakrishnan, Shyam, 2023, In: iScience. 26, 8, 22 p., 107307.

      Research output: Contribution to journal › Journal article › Research › peer-review

    29. Published

      The genetic history of Scandinavia from the Roman Iron Age to the present

      Rodríguez-Varela, R., Moore, K. H. S., Ebenesersdóttir, S. S., Kilinc, G. M., Kjellström, A., Papmehl-Dufay, L., Alfsdotter, C., Berglund, B., Alrawi, L., Kashuba, N., Sobrado, V., Lagerholm, V. K., Gilbert, E., Cavalleri, G. L., Hovig, E., Kockum, I., Olsson, T., Alfredsson, L., Hansen, T. F., Werge, T. & 24 others, Munters, A. R., Bernhardsson, C., Skar, B., Christophersen, A., Turner-Walker, G., Gopalakrishnan, Shyam, Daskalaki, E., Omrak, A., Pérez-Ramallo, P., Skoglund, P., Girdland-Flink, L., Gunnarsson, F., Hedenstierna-Jonson, C., Gilbert, M Thomas P, Lidén, K., Jakobsson, M., Einarsson, L., Victor, H., Krzewińska, M., Zachrisson, T., Storå, J., Stefánsson, K., Helgason, A. & Götherström, A., 2023, In: Cell. 186, 1, p. 32-46.e19

      Research output: Contribution to journal › Journal article › Research › peer-review

    30. Published

      Uncovering neutral and adaptive genomic differentiation among European perch with brackish water and freshwater origin in the western Baltic Sea region

      Skovrind, Mikkel, Antunes Pacheco, George, Christensen, E. A. F., Gopalakrishnan, Shyam, Fietz, K., Holm-Hansen, T. H., Vieira, Filipe Garrett, Krag, M. A., Carl, Henrik, Gilbert, M Thomas P, Olsen, Morten Tange & Møller, Peter Rask, 2023, In: Fisheries Research. 268, 11 p., 106846.

      Research output: Contribution to journal › Journal article › Research › peer-review

    31. Published

      Unravelling animal–microbiota evolution on a chip

      Aizpurua Arrieta, Ostaizka, Blijleven, Kees, Trivedi, Urvish, Gilbert, M Thomas P & Alberdi, Antton, 2023, In: Trends in Microbiology. 31, 10, p. 995-1002 8 p.

      Research output: Contribution to journal › Review › Research › peer-review

    32. 2022
    33. Published

      A multi-omics approach unravels metagenomic and metabolic alterations of a probiotic and synbiotic additive in rainbow trout (Oncorhynchus mykiss)

      Rasmussen, Jacob Agerbo, Villumsen, Kasper Rømer, Ernst, M., Hansen, M., Forberg, T., Gopalakrishnan, Shyam, Gilbert, M Thomas P, Bojesen, Anders Miki, Kristiansen, Karsten & Limborg, Morten Tønsberg, 2022, In: Microbiome. 10, 19 p., 21.

      Research output: Contribution to journal › Journal article › Research › peer-review

    34. Published

      Ancient and historical DNA in conservation policy

      Jensen, E. L., Díez-del-Molino, D., Gilbert, M Thomas P, Bertola, Laura, Borges, F., Cubric-Curik, V., de Navascués, M., Frandsen, P., Heuertz, M., Hvilsom, C., Jiménez-Mena, B., Miettinen, A., Moest, M., Chrzanová Pecnerová, Patrícia, Barnes, I. & Vernesi, C., 2022, In: Trends in Ecology and Evolution. 37, 5, p. 420-429 10 p.

      Research output: Contribution to journal › Review › Research › peer-review

    35. Published

      Ancient proteins resolve controversy over the identity of Genyornis eggshell

      Demarchi, B., Stiller, Josefin, Grealy, A., Mackie, Meaghan, Deng, Y., Gilbert, M Thomas P, Clarke, J., Legendre, L. J., Boano, R., Sicheritz-Pontén, Thomas, Magee, J., KU, thw266, Bunce, M., Collins, Matthew James & Miller, G., 2022, In: PNAS. 119, 43, 9 p., e2109326119.

      Research output: Contribution to journal › Journal article › Research › peer-review

    36. Published

      Archival influenza virus genomes from Europe reveal genomic variability during the 1918 pandemic

      Patrono, L. V., Vrancken, B., Budt, M., Düx, A., Lequime, S., Boral, S., Gilbert, M. T. P., Gogarten, J. F., Hoffmann, L., Horst, D., Merkel, K., Morens, D., Prepoint, B., Schlotterbeck, J., Schuenemann, V. J., Suchard, M. A., Taubenberger, J. K., Tenkhoff, L., Urban, C., Widulin, N. & 6 others, Winter, E., Worobey, M., Schnalke, T., Wolff, T., Lemey, P. & Calvignac-Spencer, S., 2022, In: Nature Communications. 13, 9 p., 2314.

      Research output: Contribution to journal › Journal article › Research › peer-review

    37. Published

      Conservation genomics of the endangered Seychelles Magpie-Robin (Copsychus sechellarum): a unique insight into the history of a precious endemic bird

      Cavill, Emily Louisa, Gopalakrishnan, Shyam, Puetz, Lara Christine, Ribeiro, Â. M., Mak, Sarah Siu Tze, Rodrigues da Fonseca, Rute Andreia, Antunes Pacheco, George, Dunlop, B., Accouche, W., Shah, N., Zora, A., Calabrese, L., Genner, M., Jones, G., Guo, C., KU, thw266 & Gilbert, M Thomas P, 2022, In: Ibis. 164, 2, p. 396-410 15 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    38. Published

      Differential expression profiling of heat stressed tardigrades reveals major shift in the transcriptome

      Neves, R. C., Møbjerg, A., Kodama, M., Ramos Madrigal, Jazmin, Gilbert, M Thomas P & Møbjerg, Nadja, 2022, In: Comparative Biochemistry and Physiology - Part A: Molecular & Integrative Physiology. 267, 7 p., 111169.

      Research output: Contribution to journal › Journal article › Research › peer-review

    39. Published

      Disentangling host–microbiota complexity through hologenomics

      Alberdi, Antton, Andersen, Sandra Breum, Limborg, Morten Tønsberg, Dunn, Rob & Gilbert, M Thomas P, 2022, In: Nature Reviews Genetics. 23, 5, p. 281-297 17 p.

      Research output: Contribution to journal › Review › Research › peer-review

    40. Published

      Enriching captivity conditions with natural elements does not prevent the loss of wild-like gut microbiota but shapes its compositional variation in two small mammals

      Koziol, Adam Leslie, Larrañaga, Iñaki Odriozola, Jessen, Lasse Nyholm, Leonard, Aoife Mary, San Jose, C., Pauperio, J., Ferreira, C., Hansen, Anders Johannes, Aizpurua Arrieta, Ostaizka, Gilbert, M Thomas P & Alberdi, Antton, 2022, In: MicrobiologyOpen. 11, 5, 19 p., e1318.

      Research output: Contribution to journal › Journal article › Research › peer-review

    41. Published

      Extreme freeze-tolerance in cryophilic tardigrades relies on controlled ice formation but does not involve significant change in transcription: [Corrigendum]

      Møbjerg, A., Kodama, M., Ramos Madrigal, Jazmin, Neves, R. C., Jørgensen, Aslak, Schiøtt, M., Gilbert, M Thomas P & Møbjerg, Nadja, 2022, In: Comparative Biochemistry and Physiology - Part A: Molecular & Integrative Physiology. 271, 8 p., 111245.

      Research output: Contribution to journal › Journal article › Research › peer-review

    42. Published

      Genetic load and adaptive potential of a recovered avian species that narrowly avoided extinction

      Femerling Romero, Maria Georgette, Oosterhout, C. V., Feng, S., Bristol, R. M., KU, thw266, Groombridge, J., Gilbert, M Thomas P & Morales Villegas, Hernan Eduardo, 2022, bioRxiv, 23 p.

      Research output: Working paper › Preprint › Research

    43. Published

      Genome-wide re-sequencing reveals the adaptive potential of European ash (Fraxinus excelsior)

      Doonan, J., Budde, K. B., Lobo, A., Kosawang, C., Verbylaite, R., Pliura, A., Ulaszewski, B., Thomas, K., Konrad, H., Jørgensen, H. J. L., Seegmüller, S., Liziniewicz, M., Cleary, M., Nemesio-Gorriz, M., Fussi, B., Kirisits, T., Gilbert, M. T. P., Martin, M., Heuertz, M., Kjær, E. D. & 1 others, Nielsen, L. R., 2022, 7th IUFRO International Workshop on the Genetics of Tree-Parasite Interactions in Forestry: Book of abstracts: GTPI 2022. IUFRO, p. 49 1 p.

      Research output: Chapter in Book/Report/Conference proceeding › Conference abstract in proceedings › Research

    44. Published

      Genomic evidence refutes the hypothesis that the Bornean banteng is a distinct species

      Sun, Xin, Ciucani, M. M., Rasmussen, Jacob Agerbo, Gilbert, M Thomas P & Sinding, Mikkel Holger Strander, 2022, In: BMC Ecology and Evolution. 22, 4 p., 110.

      Research output: Contribution to journal › Journal article › Research › peer-review

    45. Published

      Genomic insights into the secondary aquatic transition of penguins

      Cole, T. L., Zhou, C., Fang, M., Pan, H., Ksepka, D. T., Fiddaman, S. R., Emerling, C. A., Thomas, D. B., Bi, X., Fang, Q., Ellegaard, M. R., Feng, S., Smith, A. L., Heath, T. A., Tennyson, A. J. D., Borboroglu, P. G., Wood, J. R., Hadden, P. W., Grosser, S., Bost, C. A. & 20 others, Cherel, Y., Mattern, T., Hart, T., Sinding, Mikkel Holger Strander, Shepherd, L. D., Phillips, R. A., Quillfeldt, P., Masello, J. F., Bouzat, J. L., Ryan, P. G., Thompson, D. R., Ellenberg, U., Dann, P., Miller, G., Dee Boersma, P., Zhao, R., Gilbert, M Thomas P, Yang, H., Zhang, D. & KU, thw266, 2022, In: Nature Communications. 13, 13 p., 3912.

      Research output: Contribution to journal › Journal article › Research › peer-review

    46. Published

      Grey wolf genomic history reveals a dual ancestry of dogs

      Bergström, A., Stanton, D. W. G., Taron, U. H., Frantz, L., Sinding, M. H. S., Ersmark, E., Pfrengle, S., Cassatt-Johnstone, M., Lebrasseur, O., Girdland-Flink, L., Fernandes, D. M., Ollivier, M., Speidel, L., Gopalakrishnan, S., Westbury, M. V., Ramos-Madrigal, J., Feuerborn, T. R., Reiter, E., Gretzinger, J., Münzel, S. C. & 61 others, Swali, P., Conard, N. J., Carøe, C., Haile, James Seymour, Linderholm, A., Androsov, S., Barnes, I., Baumann, C., Benecke, N., Bocherens, H., Brace, S., Carden, R. F., Drucker, D. G., Fedorov, S., Gasparik, M., Germonpré, M., Grigoriev, S., Groves, P., Hertwig, S. T., Ivanova, V. V., Janssens, L., Jennings, R. P., Kasparov, A. K., Kirillova, I. V., Kurmaniyazov, I., Kuzmin, Y. V., Kosintsev, P. A., Lázničková-Galetová, M., Leduc, C., Nikolskiy, P., Nussbaumer, M., O’Drisceoil, C., Orlando, L., Outram, A., Pavlova, E. Y., Perri, A. R., Pilot, M., Pitulko, V. V., Plotnikov, V. V., Protopopov, A. V., Rehazek, A., Sablin, M., Seguin-Orlando, A., Storå, J., Verjux, C., Zaibert, V. F., Zazula, G., Crombé, P., Hansen, Anders Johannes, Willerslev, Eske, Leonard, J. A., Götherström, A., Pinhasi, R., Schuenemann, V. J., Hofreiter, M., Gilbert, M Thomas P, Shapiro, B., Larson, G., Krause, J., Dalén, L. & Skoglund, P., 2022, In: Nature. 607, 7918, p. 313-320

      Research output: Contribution to journal › Journal article › Research › peer-review

    47. Published

      Novel strategies to improve chicken performance and welfare by unveiling host-microbiota interactions through hologenomics

      Tous, N., Marcos, S., Goodarzi Boroojeni, F., Pérez de Rozas, A., Zentek, J., Estonba, A., Sandvang, D., Gilbert, M Thomas P, Esteve-Garcia, E., Finn, R., Alberdi, Antton & Tarradas, J., 2022, In: Frontiers in Physiology. 13, 14 p., 884925.

      Research output: Contribution to journal › Journal article › Research › peer-review

    48. Published

      Phylogenomics of the world's otters

      de Ferran, V., Figueiró, H. V., Trindade, F. D. J., Smith, O., Sinding, Mikkel Holger Strander, Trinca, C. S., Lazzari, G. Z., Veron, G., Vianna, J. A., Barbanera, F., Kliver, S., Serdyukova, N., Bulyonkova, T., Ryder, O. A., Gilbert, M Thomas P, Koepfli, K. & Eizirik, E., 2022, In: Current Biology. 32, 16, p. 3650-3658.e4 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    49. Published

      Probing the genomic limits of de-extinction in the Christmas Island rat

      Lin, J., Duchene, David, Carøe, C., Smith, O., Ciucani, M. M., Niemann, Jonas, Richmond, D., Greenwood, A. D., MacPhee, R., KU, thw266, Gopalakrishnan, Shyam & Gilbert, M Thomas P, 2022, In: Current Biology. 32, 7, p. 1650-1656.e3

      Research output: Contribution to journal › Journal article › Research › peer-review

    50. Published

      Rhizosphere bacterial communities differ among traditional maize landraces

      Lund, M., Rasmussen, Jacob Agerbo, Ramos Madrigal, Jazmin, Sawers, R., Gilbert, M Thomas P & Barnes, Christopher James, 2022, In: Environmental DNA. 4, 6, p. 1241-1249 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    51. Published

      Species-specific traits mediate avian demographic responses under past climate change

      Germain, Ryan Ross, Feng, S., Chen, G., Graves, G. R., Tobias, J. A., Rahbek, Carsten, Lei, F., Fjeldså, Jon, Hosner, Peter Andrew, Gilbert, M Thomas P, KU, thw266 & Nogues, David Bravo, 2022, bioRxiv, 24 p.

      Research output: Working paper › Preprint › Research

    52. Published

      The Australian dingo is an early offshoot of modern breed dogs

      Field, M. A., Yadav, S., Dudchenko, O., Esvaran, M., Rosen, B. D., Skvortsova, K., Edwards, R. J., Keilwagen, J., Cochran, B. J., Manandhar, B., Bustamante, S., Rasmussen, J. A., Melvin, R. G., Chernoff, B., Omer, A., Colaric, Z., Chan, E. K. F., Minoche, A. E., Smith, T. P. L., Gilbert, M. T. P. & 5 others, Bogdanovic, O., Zammit, R. A., Thomas, T., Aiden, E. L. & Ballard, J. W. O., 2022, In: Science Advances. 8, 16, 14 p., eabm5944.

      Research output: Contribution to journal › Journal article › Research › peer-review

    53. Published

      The Earth BioGenome Project 2020: Starting the clock

      Lewin, H. A., Richards, S., Aiden, E. L., Allende, M. L., Archibald, J. M., Bálint, M., Barker, K. B., Baumgartner, B., Belov, K., Bertorelle, G., Blaxter, M. L., Cai, J., Caperello, N. D., Carlson, K., Castilla-Rubio, J. C., Chaw, S. M., Chen, L., Childers, A. K., Coddington, J. A., Conde, D. A. & 65 others, Corominas, M., Crandall, K. A., Crawford, A. J., DiPalma, F., Durbin, R., Ebenezer, T. E., Edwards, S. V., Fedrigo, O., Flicek, P., Formenti, G., Gibbs, R. A., Gilbert, M Thomas P, Goldstein, M. M., Graves, J. M., Greely, H. T., Grigoriev, I. V., Hackett, K. J., Hall, N., Haussler, D., Helgen, K. M., Hogg, C. J., Isobe, S., Jakobsen, K. S., Janke, A., Jarvis, E. D., Johnson, W. E., Jones, S. J. M., Karlsson, E. K., Kersey, P. J., Kim, J. H., Kress, W. J., Kuraku, S., Lawniczak, M. K. N., Leebens-Mack, J. H., Li, X., Lindblad-Toh, K., Liu, X., Lopez, J. V., Marques-Bonet, T., Mazard, S., Mazet, J. A. K., Mazzoni, C. J., Myers, E. W., O’Neill, R. J., Paez, S., Park, H., Robinson, G. E., Roquet, C., Ryder, O. A., Sabir, J. S. M., Shaffer, H. B., Shank, T. M., Sherkow, J. S., Soltis, P. S., Tang, B., Tedersoo, L., Uliano-Silva, M., Wang, K., Wei, X., Wetzer, R., Wilson, J. L., Xu, X., Yang, H., Yoder, A. D. & KU, thw266, 2022, In: PNAS. 119, 4, 7 p., e2115635118.

      Research output: Contribution to journal › Review › Research › peer-review

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    ID: 12980