Fernando Racimo
Associate Professor
Section for Molecular Ecology and Evolution
Øster Farimagsgade 5, bygning 7, 1353 København K
Member of:
- 2024
- Published
Population genomics of post-glacial western Eurasia
Allentoft, M. E., Sikora, M., Refoyo-Martínez, A., Irving-Pease, E. K., Fischer, A., Barrie, W., Ingason, A., Stenderup, J., Sjögren, K-G., Pearson, A., da Mota, B. S., Paulsson, B. S., Halgren, A., Macleod, R., Jørkov, M. L. S., Demeter, F., Sørensen, L., Nielsen, P. O., Henriksen, R. A., Vimala, T. & 144 others, , 2024, In: Nature. 625, 7994, p. 301-311Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Vittrup Man–The life-history of a genetic foreigner in Neolithic Denmark
Fischer, A., Sjögren, K-G., Jensen, T. Z. T., Jørkov, M. L., Lysdahl, P., Vimala, T., Refoyo-martínez, A., Scorrano, G., Price, T. D., Gröcke, D. R., Gotfredsen, A. B., Sørensen, L., Alexandersen, V., Wåhlin, S., Stenderup, J., Bennike, O., Ingason, A., Iversen, R., Sikora, M., Racimo, F. & 3 others, , 2024, In: PLoS ONE. 19, 2, p. 1-27Research output: Contribution to journal › Journal article › Research › peer-review
- 2023
- Published
Selvfølgelig skal KU føre en ambitiøs klimapolitik
Ejsing, Mads, Papazu, I., Racimo, Fernando, Jørgensen, M. S., Bjerre, L., el-Wakil, Alice, Rigkos-Zitthen, I., Nielsen, Anne Bach, Jordal, N. B., Christiansen, Kirstine Lund, Fals, K. B., Christensen, S., Horn, L., Andersen, G., Buerkert, J. S., Lund, Jens Friis & Appel Olsen, F., 31 Jul 2023, Universitetsavisen, Københavns Universitet.Research output: Other contribution › Net publication - Internet publication › Communication
- Published
Ancient dolphin genomes reveal rapid repeated adaptation to coastal waters
Louis, Marie Georgette Yolande J, Korlević, P., Nykänen, M., Archer, F., Berrow, S., Brownlow, A., Lorenzen, Eline, O'Brien, J., Post, K., Racimo, Fernando, Rogan, E., Rosel, P. E., Sinding, Mikkel Holger Strander, van der Es, H., Wales, N., Fontaine, M. C., Gaggiotti, O. E. & Foote, A. D., 2023, In: Nature Communications. 14, 13 p., 4020.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Dealing with dimensionality: the application of machine learning to multi-omics data
Feldner-Busztin, D., Nisantzis, P. F., Edmunds, S. J., Boza, G., Racimo, Fernando, Gopalakrishnan, Shyam, Limborg, Morten Tønsberg, Lahti, L. & de Polavieja, G. G., 2023, In: Bioinformatics. 39, 2, 8 p., btad021.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome sequencing of 2000 canids by the Dog10K consortium advances the understanding of demography, genome function and architecture
Meadows, J. R. S., Kidd, J. M., Wang, G. D., Parker, H. G., Schall, P. Z., Bianchi, M., Christmas, M. J., Bougiouri, K., Buckley, R. M., Hitte, C., Nguyen, A. K., Wang, C., Jagannathan, V., Niskanen, J. E., Frantz, L. A. F., Arumilli, M., Hundi, S., Lindblad-Toh, K., Ginja, C., Agustina, K. K. & 28 others, , 2023, In: Genome Biology. 24, 41 p., 187.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Population genomics of the island thrush elucidates one of earth's great archipelagic radiations
Hart Reeve, A., Gower, Graham, Pujolar, J. M., Smith, B. T., Petersen, Bent, Olsson, U., Haryoko, T., Koane, B., Maiah, G., Blom, M. P. K., Ericson, P. G. P., Irestedt, M., Racimo, Fernando & Jønsson, Knud Andreas, 2023, In: Evolution Letters. 7, 1, p. 24-36 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The transcriptional and regulatory identity of erythropoietin producing cells
Kragesteen, B. K., Giladi, A., David, E., Halevi, S., Geirsdóttir, L., Lempke, O. M., Li, B., Bapst, A. M., Xie, K., Katzenelenbogen, Y., Dahl, S. L., Sheban, F., Gurevich-Shapiro, A., Zada, M., Phan, T. S., Avellino, R., Wang, S-Y., Barboy, O., Shlomi-Loubaton, S., Winning, S. & 15 others, , 2023, In: Nature Medicine. 29, 5, p. 1191-1200Research output: Contribution to journal › Journal article › Research › peer-review
- 2022
- Published
A match made in the Anthropocene: human-mediated adaptive introgression across a speciation continuum
Racimo, Fernando, 2022, In: Peer Community In Evolutionary Biology. 2022, 4 p., 100149.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Detecting Selection in Multiple Populations by Modeling Ancestral Admixture Components
Cheng, J. Y., Stern, A. J., Racimo, Fernando & Nielsen, Rasmus, 2022, In: Molecular Biology and Evolution. 39, 1, 14 p., msab294.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Detection of Neanderthal Adaptively Introgressed Genetic Variants That Modulate Reporter Gene Expression in Human Immune Cells
Jagoda, E., Xue, J. R., Reilly, S. K., Dannemann, M., Racimo, Fernando, Huerta-Sanchez, E., Sankararaman, S., Kelso, J., Pagani, L., Sabeti, P. C. & Capellini, T. D., 2022, In: Molecular Biology and Evolution. 39, 1, 20 p., msab304.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Ethical Publishing: How Do We Get There?
Racimo, Fernando, Galtier, N., De Herde, V., Bonn, N. A., Phillips, B., Guillemaud, T. & Bourget, D., 2022, In: Philosophy, Theory, and Practice in Biology. 14, 22 p., 15.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Modeling the spatiotemporal spread of beneficial alleles using ancient genomes
Muktupavela, Rasa Audange, Petr, Martin, Ségurel, L., Korneliussen, Thorfinn Sand, Novembre, J. & Racimo, Fernando, 2022, In: eLife. 11, 33 p., e73767.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
- Published
Point of View: The biospheric emergency calls for scientists to change tactics
Racimo, Fernando, Valentini, E., Rijo De León, G., Santos, T. L., Norberg, A., Atmore, L. M., Murray, M., Hakala, S. M., Appel Olsen, F., Gardner, C. & Halder, J. B., 2022, In: eLife. 11, 15 p., e83292.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Population Genomics of Stone Age Eurasia
Allentoft, M. E., Sikora, M., Refoyo-Martínez, A., Irving-Pease, E. K., Fischer, A., Barrie, W., Ingason, A., Stenderup, J., Sjögren, K-G., Pearson, A., Mota, B., Paulsson, B. S., Halgren, A., Macleod, R., Schjellerup Jørkov, M. L., Demeter, F., Novosolov, M., Sørensen, L., Nielsen, P-O., Henriksen, R. H. A. & 143 others, , 2022, p. 1-71, (bioRxiv).Research output: Working paper › Preprint › Research
- Published
Population genomics of the island thrush elucidates one of earth’s great archipelagic radiations
Hart Reeve, A., Gower, Graham, Pujolar, J. M., Smith, B. T., Petersen, Bent, Olsson, U., Haryoko, T., Koane, B., Maiah, G., Blom, M. P. K., Ericson, P. G. P., Irestedt, M., Racimo, Fernando & Jønsson, Knud Andreas, 2022, bioRxiv, 46 p.Research output: Working paper › Preprint › Research
- Published
Reply to: When did mammoths go extinct?
Wang, Y., Prohaska, A., Dong, H., Alberti, A., Alsos, I. G., Beilman, D. W., Bjørk, A. A., Cao, J., Cherezova, A. A., Coissac, E., De Sanctis, B., Denoeud, F., Dockter, C., Durbin, R., Edwards, M. E., Edwards, N. R., Esdale, J., Fedorov, G. B., Fernandez-Guerra, A., Froese, D. G. & 32 others, , 2022, In: Nature. 612, 7938, p. E4-E6Research output: Contribution to journal › Comment/debate › Research › peer-review
- Published
The Selection Landscape and Genetic Legacy of Ancient Eurasians
Irving-Pease, E., Refoyo Martínez, A., Ingason, A., Pearson, A., Fischer, A., Barrie, W., Sjögren, K-G., Halgren, A. S., Macleod, R., Demeter, F., Henriksen, R. H. A., Vimala, T., McColl, H., Vaughn, A., Stern, A. J., Speidel, L., Scorrano, G., Ramsøe, A., Schork, A. J., Rosengren, A. & 12 others, , 2022, bioRxiv, 26 p.Research output: Working paper › Preprint › Research
- Published
The feasibility of palaeoproteomics for studying ancient hominins from South Africa
Madupe, Palesa Petunia, Hlazo, N., Ruther, P. L., Mackie, Meaghan, Welker, Frido, Ramos Madrigal, Jazmin, Patramanis, Ioannis, Racimo, Fernando, Schroeder, L., Olsen, Jesper Velgaard, Ackermann, R. R. & Cappellini, Enrico, 2022, In: American journal of biological anthropology. 177, S73, p. 112 1 p.Research output: Contribution to journal › Conference abstract in journal › Research › peer-review
- Published
slendr: a framework for spatio-temporal population genomic simulations on geographic landscapes
Petr, Martin, Haller, B. C., Ralph, P. L. & Racimo, Fernando, 2022, bioRxiv, 27 p.Research output: Working paper › Preprint › Research
- 2021
- Published
Detecting adaptive introgression in human evolution using convolutional neural networks
Gower, Graham, Iáñez Picazo, P., Fumagalli, M. & Racimo, Fernando, 2021, In: eLife. 10, 45 p., e64669.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
How robust are cross-population signatures of polygenic adaptation in humans?
Refoyo Martínez, Alba, Liu, S., Jørgensen, A. M., Jin, X., Albrechtsen, Anders, Martin, A. R. & Racimo, Fernando, 2021, In: Peer Community Journal. 1, 54 p., e22.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Late Quaternary dynamics of Arctic biota from ancient environmental genomics: [+ Correction]
Wang, Y., Pedersen, M. W., Alsos, I. G., De Sanctis, B., Racimo, F., Prohaska, A., Coissac, E., Owens, H. L., Merkel, M. K. F., Fernandez-Guerra, A., Rouillard, A., Lammers, Y., Alberti, A., Denoeud, F., Money, D., Ruter, A. H., McColl, H., Larsen, N. K., Cherezova, A. A., Edwards, M. E. & 30 others, , 2021, In: Nature. 600, 7887, p. 86–92 19 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Quantitative Human Paleogenetics: What can Ancient DNA Tell us About Complex Trait Evolution?
Irving-Pease, Evan, Muktupavela, Rasa Audange, Dannemann, M. & Racimo, Fernando, 2021, In: Frontiers in Genetics. 12, 11 p., 703541.Research output: Contribution to journal › Review › Research › peer-review
- 2020
- Published
The dental proteome of Homo antecessor: {with Author Correction]
Welker, F., Ramos-Madrigal, J., Gutenbrunner, P., Mackie, M., Tiwary, S., Rakownikow Jersie-Christensen, R., Chiva, C., Dickinson, M. R., Kuhlwilm, M., de Manuel, M., Gelabert, P., Martinón-Torres, M., Margvelashvili, A., Arsuaga, J. L., Carbonell, E., Marques-Bonet, T., Penkman, K., Sabidó, E., Cox, J., Olsen, J. V. & 6 others, , Apr 2020, In: Nature. 580, 7802, p. 235-238 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A community-maintained standard library of population genetic models
Adrion, J. R., Cole, C. B., Dukler, N., Galloway, J. G., Gladstein, A. L., Gower, G., Kyriazis, C. C., Ragsdale, A. P., Tsambos, G., Baumdicker, F., Carlson, J., Cartwright, R. A., Durvasula, A., Gronau, I., Kim, B. Y., McKenzie, P., Messer, P. W., Noskova, E., Ortega-Del Vecchyo, D., Racimo, F. & 9 others, , 2020, In: eLife. 9, 29 p., 54967.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Beyond broad strokes: sociocultural insights from the study of ancient genomes
Racimo, Fernando, Sikora, Martin, Vander Linden, M., Schroeder, Hannes & Lalueza-Fox, C., 2020, In: Nature Reviews Genetics. 21, p. 355-366 1398.Research output: Contribution to journal › Review › Research › peer-review
- Published
Direct Identification of Neanderthal Introgressed Genetic Variation Affecting Gene Expression in Modern Human Immune Cell Lines
Jagoda, E., Xue, J., Reilly, S., Dannemann, M., Racimo, Fernando, Huerta-Sanchez, E., Sankararaman, S., Kelso, J., Pagani, L., Sabeti, P. & Capellini, T. D., 2020, p. 130-130.Research output: Contribution to conference › Conference abstract for conference › Research › peer-review
- Published
Population genomics of the Viking world: [incl. correction]
Margaryan, A., Lawson, D. J., Sikora, M., Racimo, F., Rasmussen, S., Moltke, I., Cassidy, L. M., Jørsboe, E., Ingason, A., Pedersen, M. W., Korneliussen, T., Wilhelmson, H., Buś, M. M., de Barros Damgaard, P., Martiniano, R., Renaud, G., Bhérer, C., Moreno-Mayar, J. V., Fotakis, A. K., Allen, M. & 30 others, , 2020, In: Nature. 585, 7825, p. 390-396 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The spatiotemporal spread of human migrations during the European Holocene
Racimo, Fernando, Woodbridge, J., Fyfe, R. M., Sikora, Martin, Sjogren, K., Kristiansen, K. & Vander Linden, M., 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 16, p. 8989-9000 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2019
- Published
Human Disease Variation in the Light of Population Genomics
Prohaska, Ana, Racimo, Fernando, Schork, A. J., Sikora, Martin, Stern, A. J., Ilardo, M., Allentoft, Morten Erik, Folkersen, L., Buil, A., Moreno Mayar, J. Víctor, Korneliussen, Thorfinn Sand, Geschwind, D., Ingason, A., Werge, Thomas, Nielsen, Rasmus & Willerslev, Eske, 2019, In: Cell. 177, 1, p. 115-131 17 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Identifying loci under positive selection in complex population histories
Refoyo Martínez, Alba, Rodrigues da Fonseca, Rute Andreia, Halldórsdóttir, K., Árnason, E., Mailund, T. & Racimo, Fernando, 2019, In: Genome Research. 29, 9, p. 1506-1520Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Reduced signal for polygenic adaptation of height in UK Biobank
Berg, J. J., Harpak, A., Sinnott-Armstrong, N., Jørgensen, A. M., Mostafavi, H., Field, Y., Boyle, E. A., Zhang, X., Racimo, Fernando, Pritchard, J. K. & Coop, G., 2019, In: eLife. 8, 47 p., e39725.Research output: Contribution to journal › Journal article › Research › peer-review
- 2018
- Published
Early human dispersals within the Americas
Moreno-Mayar, J. V., Vinner, L., de Barros Damgaard, P., de la Fuente, C., Allentoft, M. E., Vimala, T., Racimo, F., Rasmussen, S., Margaryan, A., Iraeta Orbegozo, M., Mylopotamitaki, D., Alexandersen, V., Primeau, C., Gregersen, K., Hansen, K. L., Lynnerup, N., Kjær, K., Schroeder, H., Malaspinas, A. S., Sikora, M. & 2 others, , 7 Dec 2018, In: Science (New York, N.Y.). 362, 6419, p. 1, 1-11 12 p., eaav2621.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The prehistoric peopling of Southeast Asia
McColl, H., Racimo, F., Vinner, L., Demeter, F. P. M., Gakuhari, T., Moreno Mayar, J. V., van Driem, G., Gram Wilken, U., Seguin-Orlando, A., de la Fuente Castro, C. P., Wasef, S., Shoocongdej, R., Souksavatdy, V., Sayavongkhamdy, T., Saidin, M. M., Allentoft, M. E., Sato, T., Malaspinas, A-S., Aghakhanian, F. A., Korneliussen, T. S. & 46 others, , 6 Jul 2018, In: Science (New York, N.Y.). 361, 6397, p. 88-92 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Detecting Polygenic Adaptation in Admixture Graphs
Racimo, Fernando, Berg, J. J. & Pickrell, J. K., Apr 2018, In: Genetics. 208, 4, p. 1565-1584 20 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Ancient Biomolecules and Evolutionary Inference
Cappellini, Enrico, Prohaska, Ana, Racimo, Fernando, Welker, Frido, Pedersen, Mikkel Winther, Allentoft, Morten Erik, Damgaard, P. D. B., Gutenbrunner, P., Dunne, J., Hammann, S., Roffet-Salque, M., Ilardo, M., Moreno Mayar, J. Víctor, Wang, Yucheng, Sikora, Martin, Vinner, Lasse, Cox, J., Evershed, R. P. & Willerslev, Eske, 2018, In: Annual Review of Biochemistry. 87, 32 p., 36.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Physiological and Genetic Adaptations to Diving in Sea Nomads
Ilardo, M. A., Moltke, Ida, Korneliussen, Thorfinn Sand, Cheng, J., Stern, A. J., Racimo, Fernando, Damgaard, P. D. B., Sikora, Martin, Seguin-Orlando, A., Rasmussen, Simon, van den Munckhof, I. C. L., ter Horst, R., Joosten, L. A. B., Netea, M. G., Salingkat, S., Nielsen, Rasmus & Willerslev, Eske, 2018, In: Cell. 173, 3, p. 569-580 12 p., e15.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Something old, something borrowed: Admixture and adaptation in human evolution
Dannemann, M. & Racimo, Fernando, 2018, In: Current Opinion in Genetics & Development. p. 1-8 8 p.Research output: Contribution to journal › Review › Research › peer-review
- 2017
- Published
Natural selection on genes related to cardiovascular health in high-altitude adapted Andeans
Crawford, J. E., Amaru, R., Song, J., Julian, C. G., Racimo, Fernando, Cheng, J. Y., Guo, X., Yao, J., Ambale-Venkatesh, B., Lima, J. A., Rotter, J. I., Stehlik, J., Moore, L. G., Prchal, J. T. & Nielsen, Rasmus, 2 Nov 2017, In: American Journal of Human Genetics. 101, 5, p. 752-767 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Selection in Europeans on fatty acid desaturases associated with dietary changes
Buckley, M. T., Racimo, Fernando, Allentoft, Morten Erik, Jensen, M. K., Jonsson, Anna Elisabet, Huang, H., Hormozdiari, F., Sikora, Martin, Marnetto, D., Eskin, E., Jørgensen, M. E., Grarup, Niels, Pedersen, Oluf Borbye, Hansen, Torben, Kraft, P., Willerslev, Eske & Nielsen, Rasmus, Jun 2017, In: Molecular Biology and Evolution. 34, 6, p. 1307-1318 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Archaic adaptive introgression in TBX15/WARS2
Racimo, Fernando, Gokhman, D., Fumagalli, M., Ko, A., Hansen, Torben, Moltke, Ida, Albrechtsen, Anders, Carmel, L., Huerta-Sánchez, E. & Nielsen, Rasmus, 2017, In: Molecular Biology and Evolution. 34, 3, p. 509-524 16 p., msw283.Research output: Contribution to journal › Journal article › Research › peer-review
Deeply divergent archaic mitochondrial genome provides lower time boundary for African gene flow into Neanderthals
Posth, C., Wissing, C., Kitagawa, K., Pagani, L., van Holstein, L., Racimo, Fernando, Wehrberger, K., Conard, N. J., Kind, C. J., Bocherens, H. & Krause, J., 2017, In: Nature Communications. 8, 9 p., 16046.Research output: Contribution to journal › Journal article › Research › peer-review
Joint Estimation of Relatedness Coefficients and Allele Frequencies from Ancient Samples
Theunert, C., Racimo, Fernando & Slatkin, M., 2017, In: Genetics (Print). 206, 2, p. 1025-1035 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2015
Evidence for archaic adaptive introgression in humans
Racimo, Fernando, Sankararaman, S., Nielsen, Rasmus & Huerta-Sánchez, E., 18 May 2015, In: Nature Reviews Genetics. 16, 6, p. 359-371 13 p.Research output: Contribution to journal › Review › Research › peer-review
ID: 182564616
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Ancient Biomolecules and Evolutionary Inference
Research output: Contribution to journal › Journal article › Research › peer-review
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327
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Direct Identification of Neanderthal Introgressed Genetic Variation Affecting Gene Expression in Modern Human Immune Cell Lines
Research output: Contribution to conference › Conference abstract for conference › Research › peer-review
Published -
241
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Population Genomics of Stone Age Eurasia
Research output: Working paper › Preprint › Research
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