Globe Institute

inPhocus: The Diverse Landscape of Phage Studies in the Association of Southeast Asian Nations Region

Rajandas, Heera, Parimannan, Sivachandran, Sicheritz-Pontén, Thomas & Clokie, M. R. J., 2021, In: PHAGE: Therapy, Applications, and Research. 2, 3, p. 94-99

Research output: Contribution to journal › Journal article › Research › peer-review

Palaeogenomic insights into the origins of French grapevine diversity

Ramos Madrigal, Jazmin, Runge, Anne Kathrine Wiborg, Bouby, L., Lacombe, T., Samaniego Castruita, J. A., Adam-Blondon, A., Figueiral, I., Hallavant, C., Schaal, C., Töpfer, R., Petersen, Bent, Sicheritz-Pontén, T., This, P., Bacilieri, R., Gilbert, M Thomas P & Wales, N., 2019, In: Nature Plants. 5, 6, p. 595-603 9 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Genomes of Pleistocene Siberian Wolves Uncover Multiple Extinct Wolf Lineages

Ramos-Madrigal, J., Sinding, M-H. S., Carøe, C., Mak, S. S. T., Niemann, J., Samaniego Castruita, J. A., Fedorov, S., Kandyba, A., Germonpré, M., Bocherens, H., Feuerborn, T. R., Pitulko, V. V., Pavlova, E. Y., Nikolskiy, P. A., Kasparov, A. K., Ivanova, V. V., Larson, G., Frantz, L. A. F., Willerslev, E., Meldgaard, M. & 7 others, Petersen, Bent, Sicheritz-Pontén, Thomas, Bachmann, L., Wiig, Ø., Hansen, Anders Johannes, Gilbert, M Thomas P & Gopalakrishnan, Shyam, 2020, In: Current biology : CB. 31, p. 198-206

Research output: Contribution to journal › Journal article › Research › peer-review

Components of a Neanderthal gut microbiome recovered from fecal sediments from El Salt

Rampelli, S., Turroni, S., Mallol, C., Hernandez, C., Galvan, B., Sistiaga Gutierrez, Maria Ainara, Biagi, E., Astolfi, A., Brigidi, P., Benazzi, S., Lewis, C. M., Warinner, C., Hofman, C. A., Schnorr, S. L. & Candela, M., 2021, In: Communications Biology . 4, 1, 10 p., 169.

Research output: Contribution to journal › Journal article › Research › peer-review

The gut microbiome buffers dietary adaptation in Bronze Age domesticated dogs

Rampelli, S., Turroni, S., Debandi, F., Alberdi, Antton, Schnorr, S. L., Hofman, C. A., Taddia, A., Helg, R., Biagi, E., Brigidi, P., D'Amico, F., Cattani, M. & Candela, M., 2021, In: iScience. 24, 8, 20 p., 102816.

Research output: Contribution to journal › Journal article › Research › peer-review

Assessing the degradation of ancient milk proteins through site-specific deamidation patterns

Ramsøe, A., Crispin, M., Mackie, Meaghan, McGrath, K., Fischer, R., Demarchi, B., Collins, Matthew James, Hendy, J. & Speller, C., 2021, In: Scientific Reports. 11, 1, 14 p., 7795.

Research output: Contribution to journal › Journal article › Research › peer-review

DeamiDATE 1.0: Site-specific deamidation as a tool to assess authenticity of members of ancient proteomes

Ramsøe, A., van Heekeren, V., Ponce, P., Fischer, R., Barnes, I., Speller, C. & Collins, Matthew James, Mar 2020, In: Journal of Archaeological Science. 115, 10 p., 105080.

Research output: Contribution to journal › Journal article › Research › peer-review

Nectar provision attracts hummingbirds and connects interaction networks across habitats

Ramírez-Burbano, M. B., Amorim, F. W., Torres-González, A. M., Sonne, Jesper & Maruyama, P. K., 2022, In: Ibis. 164, 1, p. 88-101 14 p.

Research output: Contribution to journal › Journal article › Research › peer-review

From Trees to Clouds: PhageClouds for Fast Comparison of ∼640,000 Phage Genomic Sequences and Host-Centric Visualization Using Genomic Network Graphs

Rangel Piñeros, Guillermo Andres, Millard, A., Michniewski, S., Scanlan, D., Sirén, K., Reyes, A., Petersen, Bent, Clokie, M. R. J. & Sicheritz-Pontén, Thomas, 2021, In: PHAGE: Therapy, Applications, and Research. 2, 4, p. 194-203

Research output: Contribution to journal › Journal article › Research › peer-review

VIRify: An integrated detection, annotation and taxonomic classification pipeline using virus-specific protein profile hidden Markov models

Rangel Piñeros, Guillermo Andres, Almeida, A., Beracochea, M., Sakharova, E., Marz, M., Muñoz, A. R., Hölzer, M. & Finn, R. D., 2023, In: PLOS Computational Biology. 19, 8, 28 p., e1011422.

Research output: Contribution to journal › Journal article › Research › peer-review

inPhocus: “Virus Amigos?” The Journey of the Development of Phage-Based Biocontrol in the Latin American Poultry and Aquaculture Industries

Rangel Piñeros, Guillermo Andres, Sicheritz-Pontén, Thomas & Clokie, M. R. J., 2021, In: PHAGE: Therapy, Applications, and Research. 2, 1, p. 3-6

Research output: Contribution to journal › Journal article › Research › peer-review

Long-distance dispersal in the short-distance dispersing house sparrow (Passer domesticus)

Ranke, P. S., Pedersen, Michael Pepke, Søraker, J. S., David, G., Araya-Ajoy, Y. G., Wright, J., Nafstad, Å. M., Rønning, B., Pärn, H., Ringsby, T. H., Jensen, H. & Sæther, B., 2024, In: Ecology and Evolution. 14, 5, 8 p., e11356.

Research output: Contribution to journal › Journal article › Research › peer-review

Palaeoproteomic analysis of Pleistocene cave hyenas from east Asia

Rao, H., Yang, Y., Liu, J., Westbury, Michael Vincent, Zhang, C. & Shao, Q., 2020, In: Scientific Reports. 10, 1, p. 1-12 12 p., 16674.

Research output: Contribution to journal › Journal article › Research › peer-review

The rise of genomics in snake venom research: recent advances and future perspectives

Rao, W. Q., Kalogeropoulos, K., Allentoft, Morten Erik, Gopalakrishnan, Shyam, Zhao, W., Workman, C. T., Knudsen, C., Jiménez-Mena, B., Seneci, L., Mousavi-Derazmahalleh, M., Jenkins, T. P., Rivera-de-Torre, E., Liu, S. Q. & Laustsen, A. H., 2022, In: GigaScience. 11, 16 p., giac024.

Research output: Contribution to journal › Journal article › Research › peer-review

Editorial: Ecological Non-equilibrium in the Anthropocene

Rapacciuolo, G., Rominger, A. J., Morueta-Holme, Naia & Blois, J. L., 2019, In: Frontiers in Ecology and Evolution. 7, 3 p., 428.

Research output: Contribution to journal › Editorial › Research › peer-review

Emergence and Spread of Basal Lineages of Yersinia pestis during the Neolithic Decline

Rascovan, N., Sjogren, K., Kristiansen, K., Nielsen, Rasmus, Willerslev, Eske, Desnues, C. & Rasmussen, Simon, 2019, In: Cell. 176, 1-2, p. 295-305.e10

Research output: Contribution to journal › Journal article › Research › peer-review

Viviparous sea snakes can be used as bioindicators for diverse marine environments

Rasmussen, A. R., Hay-Schmidt, Anders, Boneka, F., Allentoft, Morten Erik, Sanders, K. L. & Elmberg, J., 2020, In: Philippine Journal of Systematic Biology. 14, 2, p. 1-16 16 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Was the Late Ordovician mass extinction truly exceptional?

Rasmussen, Christian Mac Ørum, Vandenbroucke, T. R. A., Nogues, David Bravo & Finnegan, S., 2023, In: Trends in Ecology and Evolution. 38, 9, p. 812-821 10 p.

Research output: Contribution to journal › Journal article › Research › peer-review

A temporal framework for the Mid–early Late Ordovician of Baltica

Rasmussen, Christian Mac Ørum, Thibault, Nicolas Rudolph, Stouge, Svend, Calner, M., Rasmussen, Jan Audun Liljeroth, Lindskog, A., Bauert, H., Sinnesael, M., Edward, O., Bagnoli, G., Siggaard-Andersen, Marie-Louise, Wu, R., Bauert, G., Ullmann, C. V., Korte, Christoph, Schovsbo, N. & Nielsen, Arne Thorshøj, 2021, In: Journal de l’Association Paléontologique Française. 2021, Numéro Spécial 2, p. 66

Research output: Contribution to journal › Conference abstract in journal › Research

The glacially induced Middle Ordovician rise of the Plectambonitoidea (Brachiopoda) and the phylogenetic placement of the Baltic genus Ukoa

Rasmussen, Christian Mac Ørum & Pedersen, M., 15 Nov 2019, In: Palaeogeography, Palaeoclimatology, Palaeoecology. 534, 14 p., 109319.

Research output: Contribution to journal › Journal article › Research › peer-review

Genome-resolved metagenomics suggests a mutualistic relationship between Mycoplasma and salmonid hosts

Rasmussen, Jacob Agerbo, Villumsen, Kasper Rømer, Duchene, David, Puetz, Lara Christine, Delmont, T. O., Sveier, H., Jørgensen, Louise von Gersdorff, Præbel, K., Martin, M. D., Bojesen, Anders Miki, Gilbert, M Thomas P, Kristiansen, Karsten & Limborg, Morten Tønsberg, 2021, In: Communications Biology. 4, 10 p., 579.

Research output: Contribution to journal › Journal article › Research › peer-review

Co-diversification of an intestinal Mycoplasma and its salmonid host

Rasmussen, Jacob Agerbo, Kiilerich, P., Madhun, A. S., Waagbø, R., Lock, E. J. R., Madsen, L., Gilbert, M Thomas P, Kristiansen, Karsten & Limborg, Morten Tønsberg, 2023, In: ISME Journal. 17, 5, p. 682-692 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Genome-resolving metagenomics reveals wild western capercaillies (Tetrao urogallus) as avian hosts for antibiotic-resistance bacteria and their interactions with the gut-virome community

Rasmussen, Jacob Agerbo & Chua, P. Y. S., 2023, In: Microbiological Research. 271, 11 p., 127372.

Research output: Contribution to journal › Journal article › Research › peer-review

Integrative analyses of probiotics, pathogenic infections and host immune response highlight the importance of gut microbiota in understanding disease recovery in rainbow trout (Oncorhynchus mykiss)

Rasmussen, Jacob Agerbo, Villumsen, Kasper Rømer, Jørgensen, Louise von Gersdorff, Forberg, T., Zuo, S., Kania, Per, Buchmann, Kurt, Kristiansen, Karsten, Bojesen, Anders Miki & Limborg, Morten Tønsberg, 2022, In: Journal of Applied Microbiology. 132, 4, p. 3201-3216 16 p.

Research output: Contribution to journal › Journal article › Research › peer-review

eDNA‐based biomonitoring at an experimental German vineyard to characterize how management regimes shape ecosystem diversity

Rasmussen, Jacob Agerbo, Nielsen, M., Mak, Sarah Siu Tze, Döring, J., Klincke, F., Gopalakrishnan, Shyam, Dunn, Rob, Kauer, R. & Gilbert, M Thomas P, 2021, In: Environmental DNA. 3, 1, p. 70-82 12 p.

Research output: Contribution to journal › Journal article › Research › peer-review

A multi-omics approach unravels metagenomic and metabolic alterations of a probiotic and synbiotic additive in rainbow trout (Oncorhynchus mykiss)

Rasmussen, Jacob Agerbo, Villumsen, Kasper Rømer, Ernst, M., Hansen, M., Forberg, T., Gopalakrishnan, Shyam, Gilbert, M Thomas P, Bojesen, Anders Miki, Kristiansen, Karsten & Limborg, Morten Tønsberg, 2022, In: Microbiome. 10, 19 p., 21.

Research output: Contribution to journal › Journal article › Research › peer-review

Assessing the genetic composition of cotton-top tamarins (Saguinus oedipus) before sweeping anthropogenic impact

Rasmussen, Linett, Fontsere, Claudia, Soto-Calderón, I. D., Guillen, R., Savage, A., Hansen, Anders Johannes, Hvilsom, C. & Gilbert, M Thomas P, 2023, In: Molecular Ecology. 32, 20, p. 5514-5527 14 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Increased Bacterial Richness Associated With Lesions Within the Porites spp. of Vietnam

Rasmussen, Linett, Barnes, Christopher James, Mak, Sarah Siu Tze, Kjartansdóttir, K. R., Hansen, T. A., Doan-Nhu, H., Nguyen-Ngoc, L., Frøslev, Tobias Guldberg, Hellström, M. & Hansen, Anders Johannes, 27 May 2020, In: Frontiers in Ecology and Evolution. 8, 151.

Research output: Contribution to journal › Journal article › Research › peer-review

Estimation of site frequency spectra from low-coverage sequencing data using stochastic EM reduces overfitting, runtime, and memory usage

Rasmussen, Malthe Sebro, Garcia Erill, Genís, Korneliussen, Thorfinn Sand, Wiuf, Carsten & Albrechtsen, Anders, 2022, In: Genetics. 222, 4, 15 p., iyac148.

Research output: Contribution to journal › Journal article › Research › peer-review

The influence of natural fire and cultural practices on island ecosystems: Insights from a 4,800 year record from Gran Canaria, Canary Islands

Ravazzi, C., Mariani, M., Criado, C., Garozzo, L., Naranjo-Cigala, A., Perez-Torrado, F. J., Pini, R., Rodriguez-Gonzalez, A., Nogué, S., Whittaker, R. J., Fernández-Palacios, J. M. & de Nascimento, L., 2021, In: Journal of Biogeography. 48, 2, p. 276-290

Research output: Contribution to journal › Journal article › Research › peer-review

High Arctic ecosystem states: Conceptual models of vegetation change to guide long-term monitoring and research

Ravolainen, V., Soininen, E. M., Jonsdottir, I. S., Eischeid, I., Forchhammer, M., van der Wal, R. & Pedersen, A. O., 2020, In: Ambio. 49, 3, p. 666-677

Research output: Contribution to journal › Journal article › Research › peer-review

Diversity gradients of terrestrial vertebrates – substantial variations about a common theme

Raz, T., Allison, A., Avila, L. J., Bauer, A. M., Böhm, M., Caetano, G. H. D. O., Colli, G., Doan, T. M., Doughty, P., Grismer, L., Itescu, Y., Kraus, F., Martins, M., Morando, M., Murali, G., Nagy, Z. T., Nogueira, C. D. C., Novosolov, M., Oliver, P. M., Passos, P. & 9 others, Pincheira-Donoso, D., Sindaco, R., Slavenko, A., Torres-Carvajal, O., Uetz, P., Wagner, P., Zimin, A., Roll, U. & Meiri, S., 2024, In: Journal of Zoology. 322, 2, p. 126-140 15 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Considering adaptive genetic variation in climate change vulnerability assessment reduces species range loss projections

Razgour, O., Forester, B., Taggart, J. B., Bekaert, M., Juste, J., Ibáñez, C., Puechmaille, S. J., Novella-Fernandez, R., Alberdi, Antton & Manel, S., 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 21, p. 10418-10423 6 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Population-level plant pollination mode is influenced by Quaternary climate and pollinators

Rech, A. R., Ollerton, J., Dalsgaard, Bo, Jorge, L. R., Sandel, B., Svenning, J., Baronio, G. J. & Sazima, M., 2021, In: Biotropica. 53, 2, p. 632-642

Research output: Contribution to journal › Journal article › Research › peer-review

The extent and distribution of joint conservation-development funding in the tropics

Reed, J., Oldekop, J., Barlow, J., Carmenta, R., Geldmann, Jonas, Ickowitz, A., Narulita, S., Rahman, S. A., van Vianen, J., Yanou, M. & Sunderland, T., 2020, In: One Earth. 3, 6, p. 753-762 10 p.

Research output: Contribution to journal › Journal article › Research › peer-review

De novo innovation allows shark parasitism and global expansion of the barnacle Anelasma squalicola

Rees, D. J., Noever, C., Finucci, B., Schnabel, K., Leslie, R. E., Drewery, J., Bergum, H. O. T., Dutilloy, A. & Glenner, Henrik, 2019, In: Current Biology. 29, 12, p. R562-R563

Research output: Contribution to journal › Editorial › Research › peer-review

Influences of Ingredients and Bakers on the Bacteria and Fungi in Sourdough Starters and Bread

Reese, A. T., Madden, A. A., Joossens, M., Lacaze, G. & Dunn, Rob, 2020, In: mSphere. 5, 1, p. 1-15 e00950-19.

Research output: Contribution to journal › Journal article › Research › peer-review

The formation of the Indo-Pacific montane avifauna

Reeve, A. H., Kennedy, J. D., Pujolar, J. M., Petersen, Bent, Blom, M. P. K., Alström, P., Haryoko, T., Ericson, P. G. P., Irestedt, M., Nylander, J. A. A. & Jønsson, Knud Andreas, 2023, In: Nature Communications. 14, 15 p., 8215.

Research output: Contribution to journal › Journal article › Research › peer-review

How robust are cross-population signatures of polygenic adaptation in humans?

Refoyo Martínez, Alba, Liu, S., Jørgensen, A. M., Jin, X., Albrechtsen, Anders, Martin, A. R. & Racimo, Fernando, 2021, In: Peer Community Journal. 1, 54 p., e22.

Research output: Contribution to journal › Journal article › Research › peer-review

Identifying loci under positive selection in complex population histories

Refoyo Martínez, Alba, Rodrigues da Fonseca, Rute Andreia, Halldórsdóttir, K., Árnason, E., Mailund, T. & Racimo, Fernando, 2019, In: Genome Research. 29, 9, p. 1506-1520

Research output: Contribution to journal › Journal article › Research › peer-review

Secondary metabolite biosynthetic diversity in Arctic Ocean metagenomes

Rego, A., Fernandez Guerra, Antonio, Duarte, P., Assmy, P., Leão, P. N. & Magalhães, C., 2021, In: Microbial genomics. 7, 12, 14 p., 000731.

Research output: Contribution to journal › Journal article › Research › peer-review

Joint Estimates of Heterozygosity and Runs of Homozygosity for Modern and Ancient Samples

Renaud, Gabriel, Hanghøj, Kristian Ebbesen, Korneliussen, Thorfinn Sand, Willerslev, Eske & Orlando, L., 2019, In: Genetics (Print). 212, 3, p. 587-614 28 p.

Research output: Contribution to journal › Journal article › Research › peer-review

The avocado genome informs deep angiosperm phylogeny, highlights introgressive hybridization, and reveals pathogen-influenced gene space adaptation

Rendón-Anaya, M., Ibarra-Laclette, E., Méndez-Bravo, A., Lan, T., Zheng, C., Carretero-Paulet, L., Perez-Torres, C. A., Chacón-López, A., Hernandez-Guzmán, G., Chang, T. H., Farr, K. M., Brad Barbazuk, W., Chamala, S., Mutwil, M., Shivhare, D., Alvarez-Ponce, D., Mitter, N., Hayward, A., Fletcher, S., Rozas, J. & 9 others, Gracia, A. S., Kuhn, D., Barrientos-Priego, A. F., Salojärvi, J., Librado, P., Sankoff, D., Herrera-Estrella, A., Albert, V. A. & Herrera-Estrella, L., 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 34, p. 17081-17089 9 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Topographic barriers drive the pronounced genetic subdivision of a range-limited fossorial rodent

Reuber, V. M., Westbury, Michael Vincent, Rey de la Iglesia, Alba, Asefa, A., Farwig, N., Miehe, G., Opgenoorth, L., Šumbera, R., Wraase, L., Wube, T., Lorenzen, Eline & Schabo, D. G., 2024, In: Molecular Ecology. 33, 5, 16 p., e17271.

Research output: Contribution to journal › Journal article › Research › peer-review

Complete mitochondrial genome of the giant root-rat (Tachyoryctes macrocephalus)

Reuber, V. M., Rey de la Iglesia, Alba, Westbury, Michael Vincent, Cabrera, Andrea A., Farwig, N., Skovrind, Mikkel, Sumbera, R., Wube, T., Opgenoorth, L., Schabo, D. G. & Lorenzen, Eline, 2021, In: Mitochondrial DNA Part B: Resources. 6, 8, p. 2191-2193 3 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Late Pleistocene paleoecology and phylogeography of woolly rhinoceroses

Rey de la Iglesia, Alba, Lister, A. M., Stuart, A. J., Bocherens, H., Szpak, P., Willerslev, Eske & Lorenzen, Eline, 2021, In: Quaternary Science Reviews. 263, 13 p., 106993.

Research output: Contribution to journal › Journal article › Research › peer-review

Mitogenomics of the endangered Mediterranean monk seal (Monachus monachus) reveals dramatic loss of diversity and supports historical gene-flow between Atlantic and eastern Mediterranean populations

Rey de la Iglesia, Alba, Gaubert, P., Themudo, G. E., Pires, R., de la Fuente, C., Freitas, L., Aguilar, A., Borrell, A., Krakhmalnaya, T., Vasconcelos, R. & Campos, P. F., 2021, In: Zoological Journal of the Linnean Society. 191, 4, p. 1147-1159

Research output: Contribution to journal › Journal article › Research › peer-review

Evolutionary history and palaeoecology of brown bear in North-East Siberia re-examined using ancient DNA and stable isotopes from skeletal remains

Rey de la Iglesia, Alba, García-Vázquez, A., Treadaway, E. C., van der Plicht, J., Baryshnikov, G. F., Szpak, P., Bocherens, H., Boeskorov, G. G. & Lorenzen, Eline, 2019, In: Scientific Reports. 9, 1, 12 p., 4462.

Research output: Contribution to journal › Journal article › Research › peer-review

MobiSeq: De novo SNP discovery in model and non-model species through sequencing the flanking region of transposable elements

Rey de la Iglesia, Alba, Gopalakrishan, S., Carøe, C., Alquezar-Planas, D. E., Nielsen, A. A., Röder, T., Pedersen, Lene Bruhn, Næsborg-Nielsen, C., Sinding, Mikkel Holger Strander, Rath, Martin Fredensborg, Li, Z., Petersen, Bent, Gilbert, M Thomas P, Bunce, M., Mourier, T. & Hansen, Anders Johannes, 2019, In: Molecular Ecology Resources. 19, 2, p. 512-525 14 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Exploring the phylogeography and population dynamics of the giant deer (Megaloceros giganteus) using Late Quaternary mitogenomes

Rey de la Iglesia, Alba, Lister, A. M., Campos, P. F., Brace, S., Mattiangeli, V., Daly, K. G., Teasdale, M. D., Bradley, D. G., Barnes, I. & Hansen, Anders Johannes, 2021, In: Proceedings of the Royal Society B: Biological Sciences. 288, 1950, 9 p., 20201864.

Research output: Contribution to journal › Journal article › Research › peer-review

Combining δ¹³C and δ¹⁵N from bone and dentine in marine mammal palaeoecological research: insights from toothed whales

Rey de la Iglesia, Alba, Wilson, T., Routledge, J., Skovrind, Mikkel, Garde, E., Heide-Jorgensen, M. P., Szpak, P. & Lorenzen, Eline, 2023, In: Isotopes in Environmental and Health Studies. 59, 1, p. 66-77 12 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Antlers far and wide: Biomolecular identification of Scandinavian hair combs from Ribe, Denmark, 720–900 CE

Rey de la Iglesia, Alba, De Jager, Deon, Presslee, S., Qvistgaard, S. S., Sindbæk, S. M. & Lorenzen, Eline, 2023, In: Journal of Archaeological Science. 153, 8 p., 105773.

Research output: Contribution to journal › Journal article › Research › peer-review

Genetic diversity of the endangered Mongolian saiga antelope Saiga tatarica mongolica (Artiodactyla: Bovidae) provides insights into conservation

Rey de la Iglesia, Alba, Hjort, J., Silva, T. L., Buuveibaatar , B., Dalannast, M., Ulziisaikhan , T., Chimeddorj , B., Espregueira-Themudo, G. & Campos, P. F., 2022, In: Biological Journal of the Linnean Society. 137, 1, p. 100-111 12 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Towards complete and error-free genome assemblies of all vertebrate species

Rhie, A., McCarthy, S. A., Fedrigo, O., Damas, J., Formenti, G., Koren, S., Uliano-Silva, M., Chow, W., Fungtammasan, A., Kim, J., Lee, C., Ko, B. J., Chaisson, M., Gedman, G. L., Cantin, L. J., Thibaud-Nissen, F., Haggerty, L., Bista, I., Smith, M., Haase, B. & 107 others, Mountcastle, J., Winkler, S., Paez, S., Howard, J., Vernes, S. C., Lama, T. M., Grutzner, F., Warren, W. C., Balakrishnan, C. N., Burt, D., George, J. M., Biegler, M. T., Iorns, D., Digby, A., Eason, D., Robertson, B., Edwards, T., Wilkinson, M., Turner, G., Meyer, A., Kautt, A. F., Franchini, P., Detrich, H. W., Svardal, H., Wagner, M., Naylor, G. J. P., Pippel, M., Malinsky, M., Mooney, M., Simbirsky, M., Hannigan, B. T., Pesout, T., Houck, M., Misuraca, A., Kingan, S. B., Hall, R., Kronenberg, Z., Sović, I., Dunn, C., Ning, Z., Hastie, A., Lee, J., Selvaraj, S., Green, R. E., Putnam, N. H., Gut, I., Ghurye, J., Garrison, E., Sims, Y., Collins, J., Pelan, S., Torrance, J., Tracey, A., Wood, J., Dagnew, R. E., Guan, D., London, S. E., Clayton, D. F., Mello, C. V., Friedrich, S. R., Lovell, P. V., Osipova, E., Al-Ajli, F. O., Secomandi, S., Kim, H., Theofanopoulou, C., Hiller, M., Zhou, Y., Harris, R. S., Makova, K. D., Medvedev, P., Hoffman, J., Masterson, P., Clark, K., Martin, F., Howe, K., Flicek, P., Walenz, B. P., Kwak, W., Clawson, H., Diekhans, M., Nassar, L., Paten, B., Kraus, R. H. S., Crawford, A. J., Gilbert, M Thomas P, KU, thw266, Venkatesh, B., Murphy, R. W., Koepfli, K., Shapiro, B., Johnson, W. E., Di Palma, F., Marques-Bonet, T., Teeling, E. C., Warnow, T., Graves, J. M., Ryder, O. A., Haussler, D., O’Brien, S. J., Korlach, J., Lewin, H. A., Howe, K., Myers, E. W., Durbin, R., Phillippy, A. M. & Jarvis, E. D., 2021, In: Nature. 592, 7856, p. 737-746 10 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Trends in legal and illegal trade of wild birds: a global assessment based on expert knowledge

Ribeiro, J., Reino, L., Schindler, S., Strubbe, D., Vall-Ilosera, M., Araújo, M. B., Capinha, C., Carrete, M., Mazzoni, S., Monteiro, M., Moreira, F., Rocha, R., Tella, J. L., Vaz, A. S., Vicente, J. & Nuno, A., 2019, In: Biodiversity and Conservation. 28, 12, p. 3343-3369

Research output: Contribution to journal › Journal article › Research › peer-review

Vulnerability of the North Water ecosystem to climate change

Ribeiro, S., Limoges, A., Massé, G., Johansen, K. L., Colgan, W., Weckström, K., Jackson, R., Georgiadis, E., Mikkelsen, N., Kuijpers, A., Olsen, J., Olsen, S. M., Nissen, M., Andersen, T. J., Strunk, A., Wetterich, S., Syväranta, J., Henderson, A. C. G., Mackay, H., Taipale, S. & 9 others, Jeppesen, E., Larsen, Nicolaj Krog, Crosta, X., Giraudeau, J., Wengrat, S., Nuttall, M., Grønnow, B., Mosbech, A. & Davidson, T. A., Dec 2021, In: Nature Communications. 12, 1, 12 p., 4475.

Research output: Contribution to journal › Journal article › Research › peer-review

31º South: The physiology of adaptation to arid conditions in a passerine bird

Ribeiro, Â. M., Puetz, Lara Christine, Pattinson, N. B., Dalén, L., Deng, Y., KU, thw266, Rodrigues da Fonseca, Rute Andreia, Smit, B. & Gilbert, M Thomas P, 2019, In: Molecular Ecology. 28, 16, p. 3709-3721 13 p.

Research output: Contribution to journal › Journal article › Research › peer-review

31° South: Dietary niche of an arid‐zone endemic passerine

Ribeiro, Â. M., Smit, B. & Gilbert, M Thomas P, 2019, In: Environmental Engineering. 1, 2, p. 109-118

Research output: Contribution to journal › Journal article › Research › peer-review

Population genomic footprints of environmental pollution pressure in natural populations of the Mediterranean mussel

Ribeiro, Â. M., Canchaya, C. A., Penaloza, F., Galindo, J. & Rodrigues da Fonseca, Rute Andreia, Jun 2019, In: Marine Genomics. 45, p. 11-15

Research output: Contribution to journal › Journal article › Research › peer-review

A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants

Rice, E. S., Alberdi, A., Alfieri, J., Athrey, G., Balacco, J. R., Bardou, P., Blackmon, H., Charles, M., Cheng, H. H., Fedrigo, O., Fiddaman, S. R., Formenti, G., Frantz, L. A. F., Gilbert, M. T. P., Hearn, C. J., Jarvis, E. D., Klopp, C., Marcos, S., Mason, A. S., Velez-Irizarry, D. & 2 others, Xu, L. & Warren, W. C., 2023, In: BMC Biology. 21, 17 p., 267.

Research output: Contribution to journal › Journal article › Research › peer-review

Identifying Mozambique's most critical areas for plant conservation: An evaluation of protected areas and Important Plant Areas

Richards, S. L., Farooq, Harith Omar Morgadinho, Matimele, H., Alves, T., Datizua, C., Langa, C., Massingue, A., Osborne, J., Rokni, S., de Sousa, C. & Darbyshire, I., 2023, In: Biotropica. 55, 6, p. 1183-1194 12 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Den bæredygtige stat i Jordens økosystem

Richardson, Katherine, 2022, In: Samfundsoekonomen. 2022, 2, p. 33-43 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Earth beyond six of nine planetary boundaries

Richardson, K., Steffen, W., Lucht, W., Bendtsen, J., Cornell, S. E., Donges, J. F., Drüke, M., Fetzer, I., Bala, G., von Bloh, W., Feulner, G., Fiedler, S., Gerten, D., Gleeson, T., Hofmann, M., Huiskamp, W., Kummu, M., Mohan, C., Nogués-Bravo, D., Petri, S. & 9 others, Porkka, M., Rahmstorf, S., Schaphoff, S., Thonicke, K., Tobian, A., Virkki, V., Wang-Erlandsson, L., Weber, L. & Rockström, J., 2023, In: Science Advances. 9, 37, 16 p., eadh2458.

Research output: Contribution to journal › Journal article › Research › peer-review

Vertical distribution of phytoplankton and primary production in relation to nutricline depth in the open ocean

Richardson, Katherine & Bendtsen, J., 2019, In: Marine Ecology - Progress Series. 620, p. 33-46 14 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Diversity and equality in the geosciences - Editorial

Richardson, Katherine (ed.), 27 Mar 2020, In: Advances in Geosciences. 53

Research output: Contribution to journal › Editorial › Research

Distinct Seasonal Primary Production Patterns in the Sub-Polar Gyre and Surrounding Seas

Richardson, Katherine & Bendtsen, J., 2021, In: Frontiers in Marine Science. 8, 14 p., 785685.

Research output: Contribution to journal › Journal article › Research › peer-review

Klimakrav vil fuldstændig ændre det landbrug vi kender

Richardson, Katherine, 2019, In: Tidsskrift for Landoekonomi. 205, 1, 102 p.

Research output: Contribution to journal › Journal article › Communication

Agenda 2030 afspejler en udvikling i forståelsen af bæredygtig udvikling

Richardson, Katherine, Aug 2019, In: Kognition og Pædagogik. 113, 3, p. 20-28 8 p., 3.

Research output: Contribution to journal › Journal article › Communication

Hav og klima i den antropocæne tidsalder

Richardson, Katherine, 2021, In: TemaMagasinet Indblik.

Research output: Contribution to journal › Journal article › Communication

Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems

Richter, D. J., Watteaux, R., Vannier, T., Leconte, J., Frémont, P., Reygondeau, G., Maillet, N., Henry, N., Benoit, G., Da Silva, O., Delmont, T. O., Fernàndez-Guerra, A., Suweis, S., Narci, R., Berney, C., Eveillard, D., Gavory, F., Guidi, L., Labadie, K., Mahieu, E. & 27 others, Poulain, J., Romac, S., Roux, S., Dimier, C., Kandels, S., Picheral, M., Searson, S., Pesant, S., Aury, J., Brum, J. R., Lemaitre, C., Pelletier, E., Bork, P., Sunagawa, S., Lombard, F., Karp-Boss, L., Bowler, C., Sullivan, M. B., Karsenti, E., Mariadassou, M., Probert, I., Peterlongo, P., Wincker, P., de Vargas, C., d'Alcalà, M. R., Iudicone, D. & Jaillon, O., 2022, In: eLife. 11, 30 p., e78129.

Research output: Contribution to journal › Journal article › Research › peer-review

Ochre, Ground Stone, and Wrapping the Dead in the Late Epipalaeolithic (Natufian) Levant: Revealing the Funerary Practices at Shubayqa 1, Jordan

Richter, Tobias, Bocaege, E., Ilsøe, Peter Carsten, Ruter, Anthony Henry, Pantos, G. A., Pedersen, P. N. & Yeomans, Lisa, 2019, In: Journal of Field Archaeology. 7, p. 440-457

Research output: Contribution to journal › Journal article › Research › peer-review

The Formation of Early Neolithic Communities in the central Zagros: an 11,500 year-old communal structure at Asiab

Richter, Tobias, Darabi, H., Alibaigi, S., Otaegui, Amaia Arranz, Bangsgaard, Pernille, Khosravi, S., Maher, L., Mortensen, P., Pedersen, P. N., Roe, J. & Yeomans, Lisa, 2021, In: Oxford Journal of Archaeology. 40, 1, p. 2-22

Research output: Contribution to journal › Journal article › Research › peer-review

Saga, settlement and sediments at Helgafell, western Iceland

Riddell, S. J., Eddudóttir, S. D., Erlendsson, E., Farnsworth, Wesley Randall, Gísladóttir, G. & Kristjánsdóttir, S., 2024, (E-pub ahead of print) In: Vegetation History and Archaeobotany. 22 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Automatic landmarking as a convenient prerequisite for geometric morphometrics. Validation on cone beam computed tomography (CBCT)- based shape analysis of the nasal complex

Ridel, A. F., Demeter, Fabrice, Galland, M., L'abbé, E. N., Vandermeulen, D. & Oettlé, A. C., 2020, In: Forensic Science International. 306, 110095.

Research output: Contribution to journal › Journal article › Research › peer-review

Nose approximation among South African groups from cone-beam computed tomography (CBCT) using a new computer-assisted method based on automatic landmarking

Ridel, A. F., Demeter, Fabrice, L'abbe, E. N., vandermeulen, D. & Oettle, A. C., 2020, In: Forensic Science International. 313, 13 p., 110357.

Research output: Contribution to journal › Journal article › Research › peer-review

Multi-proxy analyses of a mid-15th century Middle Iron Age Bantu-speaker palaeo-faecal specimen elucidates the configuration of the 'ancestral' sub-Saharan African intestinal microbiome

Rifkin, R. F., Vikram, S., Ramond, J. B., Rey de la Iglesia, Alba, Brand, T. B., Porraz, G., Val, A., Hall, G., Woodborne, S., Le Bailly, M., Potgieter, M., Underdown, S. J., Koopman, J. E., Cowan, D. A., Van De Peer, Y., Willerslev, Eske & Hansen, Anders Johannes, 6 May 2020, In: Microbiome. 8, 1, 62.

Research output: Contribution to journal › Journal article › Research › peer-review

Middle and Late Holocene relative sea level changes and coastal development at Rugård, Denmark

Riis, M. H., Sander, L., Nielsen, L., Buylaert, J., Challier, A. J. M. & Larsen, Nicolaj Krog, 2024, In: Boreas. 53, 1, p. 56-70 15 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Using ecosystem-services assessments to determine trade-offs in ecosystem-based management of marine mammals

Riisager-Simonsen, C., Rendon, O., Galatius, A., Olsen, Morten Tange & Beaumont, N., 2020, In: Conservation Biology. p. 1152-1164 13 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Catalyzing rapid discovery of gold-precipitating bacterial lineages with university students

Riley, N. G., Goller, C. C., Leggett, Z. H., Lewis, D. M., Ciccone, K. & Dunn, Rob, 2020, In: PeerJ. 8, 13 p., 8925.

Research output: Contribution to journal › Journal article › Research › peer-review

Locality or habitat? Exploring predictors of biodiversity in Amazonia

Ritter, C. D., Zizka, A., Barnes, Christopher James, Nilsson, R. H., Roger, F. & Antonelli, A., 2019, In: Ecography. 42, 2, p. 321-333

Research output: Contribution to journal › Journal article › Research › peer-review

Persistence of genetic diversity and phylogeographic structure of three New Zealand forest beetles under climate change

Rizvanovic, M., Kennedy, J. D., Nogues, David Bravo & Marske, K. A., 2019, In: Diversity and Distributions. 25, 1, p. 142-153

Research output: Contribution to journal › Journal article › Research › peer-review

Testing biodiversity theory using species richness of reef-building corals across a depth gradient

Roberts, T. E., Keith, S. A., Rahbek, Carsten, Bridge, T. C. L., Caley, M. J. & Baird, A. H., 1 Oct 2019, In: Biology Letters. 15, 10, 5 p., 20190493.

Research output: Contribution to journal › Letter › Research › peer-review

Chromosome-length genome assembly and linkage map of a critically endangered Australian bird: the helmeted honeyeater

Robledo-Ruiz, D. A., Gan, H. M., Kaur, P., Dudchenko, O., Weisz, D., Khan, R., Lieberman Aiden, E., Osipova, E., Hiller, M., Morales Villegas, Hernan Eduardo, Magrath, M. J. L., Clarke, R. H., Sunnucks, P. & Pavlova, A., 2022, In: GigaScience. 11, 13 p., giac025.

Research output: Contribution to journal › Journal article › Research › peer-review

Life in Deserts: The Genetic Basis of Mammalian Desert Adaptation

Rocha, J. L., Godinho, R., Brito, J. C. & Nielsen, Rasmus, 2021, In: Trends in Ecology & Evolution. 36, 7, p. 637-650

Research output: Contribution to journal › Review › Research › peer-review

Convergent evolution of increased urine-concentrating ability in desert mammals

Rocha, J. L., Brito, J. C., Nielsen, Rasmus & Godinho, R., 2021, In: Mammal Review. 51, 4, p. 482-491 10 p.

Research output: Contribution to journal › Review › Research › peer-review

Impact glasses from Belize represent tektites from the Pleistocene Pantasma impact crater in Nicaragua

Rochette, P., Beck, P., Bizzarro, Martin, Braucher, R., Cornec, J., Debaille, V., Devouard, B., Gattacceca, J., Jourdan, F., Moustard, F., Moynier, F., Nomade, S. & Reynard, B., 2021, In: Communications Earth & Environment. 2, 1, 8 p., 94.

Research output: Contribution to journal › Journal article › Research › peer-review

William Steffen (1947-2023): Earth system scientist with passion for people and planet

Rockström, J. & Richardson, Katherine, 2023, In: Science. 380, 6642, p. 245 1 p.

Research output: Contribution to journal › Comment/debate › Research › peer-review

The planetary commons: A new paradigm for safeguarding Earth-regulating systems in the Anthropocene

Rockström, J., Kotzé, L., Milutinovic, S., Biermann, F., Brovkin, V., Donges, J. F., Ebbesson, J., French, D., Gupta, J., Kim, R., Lenton, T., Lenzi, D., Nakicenovic, N., Neumann, B., Schuppert, F., Winkelmann, R., Bosselmann, K., Folke, C., Lucht, W., Schlosberg, D. & 2 others, Richardson, Katherine & Steffen, W., 2024, In: PNAS. 121, 5, 10 p., e2301531121.

Research output: Contribution to journal › Journal article › Research › peer-review

Phenotypic divergence in two sibling species of shorebird: Common Snipe and Wilson’s Snipe (Charadriiformes: Scolopacidae)

Rodrigues, T. M., Miller, E. H., Drovetski, S. V., Zink, R. M., Fjeldså, Jon & Gonçalves, D., 2021, In: Ibis. 163, 2, p. 429-447

Research output: Contribution to journal › Journal article › Research › peer-review

The genetic history of Scandinavia from the Roman Iron Age to the present

Rodríguez-Varela, R., Moore, K. H. S., Ebenesersdóttir, S. S., Kilinc, G. M., Kjellström, A., Papmehl-Dufay, L., Alfsdotter, C., Berglund, B., Alrawi, L., Kashuba, N., Sobrado, V., Lagerholm, V. K., Gilbert, E., Cavalleri, G. L., Hovig, E., Kockum, I., Olsson, T., Alfredsson, L., Hansen, T. F., Werge, T. & 24 others, Munters, A. R., Bernhardsson, C., Skar, B., Christophersen, A., Turner-Walker, G., Gopalakrishnan, Shyam, Daskalaki, E., Omrak, A., Pérez-Ramallo, P., Skoglund, P., Girdland-Flink, L., Gunnarsson, F., Hedenstierna-Jonson, C., Gilbert, M Thomas P, Lidén, K., Jakobsson, M., Einarsson, L., Victor, H., Krzewińska, M., Zachrisson, T., Storå, J., Stefánsson, K., Helgason, A. & Götherström, A., 2023, In: Cell. 186, 1, p. 32-46.e19

Research output: Contribution to journal › Journal article › Research › peer-review

Integration of fluorescence in situ hybridization and chromosome-length genome assemblies revealed synteny map for guinea pig, naked mole-rat, and human

Romanenko, S. A., Kliver, Sergei, Serdyukova, N. A., Perelman, P. L., Trifonov, V. A., Seluanov, A., Gorbunova, V., Azpurua, J., Pereira, J. C., Ferguson-Smith, M. A. & Graphodatsky, A. S., 2023, In: Scientific Reports. 13, 12 p., 21055.

Research output: Contribution to journal › Journal article › Research › peer-review

Deep diving harbor seals (Phoca vitulina) in South Greenland: movements, diving, haul-out and breeding activities described by telemetry

Rosing-Asvid, A., Teilmann, J., Olsen, Morten Tange & Dietz, R., 2020, In: Polar Biology. 43, 4, p. 359-368

Research output: Contribution to journal › Journal article › Research › peer-review

An evolutionarily distinct ringed seal in the Ilulissat Icefjord

Rosing-Asvid, A., Löytynoja, A., Momigliano, P., Hansen, R. G., Scharff-Olsen, Camilla Hjorth, Valtonen, M., Kammonen, J., Dietz, R., Rigét, F. F., Ferguson, S. H., Lydersen, C., Kovacs, K. M., Holland, D. M., Jernvall, J., Auvinen, P. & Olsen, Morten Tange, 2023, In: Molecular Ecology. 32, 22, p. 5932-5943 12 p.

Research output: Contribution to journal › Journal article › Research › peer-review

High-resolution, multi-proxy reconstruction of central Zagros paleoclimate and paleoenvironment from the Late Pleistocene to the Holocene

Rostami, H., Richter, Tobias, Ruter, Anthony Henry, Azizi, G., Darabi, Hojjat & Maleki, S., 2024, (E-pub ahead of print) In: Quaternary International. 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

MHCtools - an R package for MHC high-throughput sequencing data: Genotyping, haplotype and supertype inference, and downstream genetic analyses in non-model organisms

Roved, Jacob Nordvang, Hansson, B., Stervander, M., Hasselquist, D. & Westerdahl, H., 2022, In: Molecular Ecology Resources. 22, 7, p. 2775-2792 18 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Co-occurrence of snow leopard Panthera uncia, Siberian ibex Capra sibirica and livestock: potential relationships and effects

Rovero, F., Augugliaro, C., Havmøller, Rasmus Worsøe, Groff, C., Zimmermann, F., Oberosler, V. & Tenan, S., Jan 2020, In: Oryx. 54, 1, p. 118-124

Research output: Contribution to journal › Journal article › Research › peer-review

HaploCart: Human mtDNA haplogroup classification using a pangenomic reference graph

Rubin, J. D., Vogel, N. A., Gopalakrishnan, Shyam, Sackett, P. W. & Renaud, G., 2023, In: PLOS Computational Biology. 19, 6, 27 p., e1011148.

Research output: Contribution to journal › Journal article › Research › peer-review

The Late Middle Palaeolithic Occupation of Abri du Maras (Layer 1, Neronian, Southeast France): Integrating Lithic Analyses, ZooMS and Radiocarbon Dating to Reconstruct Neanderthal Hunting Behaviour

Ruebens, K., Sinet-Mathiot, V., Talamo, S., Smith, G. M., Welker, Frido, Hublin, J. & McPherron, S. P., 2022, In: Journal of Paleolithic Archaeology. 5, 1, 39 p., 4.

Research output: Contribution to journal › Journal article › Research › peer-review

Neanderthal subsistence, taphonomy and chronology at Salzgitter-Lebenstedt (Germany): a multifaceted analysis of morphologically unidentifiable bone

Ruebens, K., Smith, G. M., Fewlass, H., Sinet-Mathiot, V., Hublin, J. & Welker, Frido, 2023, In: Journal of Quaternary Science. 38, 4, p. 471-487 17 p.

Research output: Contribution to journal › Journal article › Research › peer-review

A biocodicological analysis of the medieval library and archive from Orval Abbey, Belgium

Ruffini-Ronzani, N., Nieus, J., Soncin, S., Hickinbotham, S., Dieu, M., Bouhy, J., Charles, C., Ruzzier, C., Falmagne, T., Hermand, X., Collins, Matthew James & Deparis, O., 2021, In: Royal Society Open Science. 8, 6, 14 p., 210210.

Research output: Contribution to journal › Journal article › Research › peer-review

The Fossils of Speothos Pacivorus (Carnivora: Canidae) at the Peter Lund/Quaternary Collection of the Natural History Museum of Denmark

Ruiz, J. V., Kyriakouli, C., Gundlach, C., Ferreira, G. S., Machado, F. A., Godoy, P. L., Castro, M. C., Montefeltro, F. C. & Hansen, Kasper Lykke, 2024, In: MorphoMuseuM. 10, 2, p. e229

Research output: Contribution to journal › Journal article › Research › peer-review

Holocene deglaciation drove rapid genetic diversification of Atlantic walrus

Ruiz Puerta, Emily Johana, Keighley (Weber), Xenia, Desjardins, S. P. A., Gotfredsen, Anne Birgitte, Pan, S. E., Star, B., Boessenkool, S., Barrett, J. H., McCarthy, Morgan Lee, Andersen, L. W., Born, E. W., Howse, L. R., Szpak, P., Pálsson, S., Malmquist, H. J., Rufolo, S., Jordan, P. D. & Olsen, Morten Tange, 2023, In: Proceedings of the Royal Society B: Biological Sciences. 290, 2007, 11 p., 20231349.

Research output: Contribution to journal › Journal article › Research › peer-review

Palaeoproteomic analyses of dog palaeofaeces reveal a preserved dietary and host digestive proteome

Runge, Anne Kathrine Wiborg, Hendy, J., Richter, K. K., Masson-MacLean, E., Britton, K., Mackie, Meaghan, McGrath, K., Collins, Matthew James, Cappellini, Enrico & Speller, C., 2021, In: Proceedings of the Royal Society B: Biological Sciences. 288, 1954, 10 p., 20210020.

Research output: Contribution to journal › Journal article › Research › peer-review

Making space for birds: sourcing solutions from the mountain gorilla conservation model in Rwanda

Rurangwa, M. L. & Whittaker, R. J., 2020, In: Journal for Nature Conservation. 54, 10 p., 125797.

Research output: Contribution to journal › Journal article › Research › peer-review

Functional and phylogenetic diversity of an agricultural matrix avifauna: The role of habitat heterogeneity in Afrotropical farmland

Rurangwa, M. L., Niyigaba, P., Tobias, J. A. & Whittaker, R. J., 2022, In: Ecology and Evolution. 12, 7, 13 p., e9024.

Research output: Contribution to journal › Journal article › Research › peer-review

Assessing tropical forest restoration after fire using birds as indicators: An afrotropical case study

Rurangwa, M. L., Matthews, T. J., Niyigaba, P., Tobias, J. A. & Whittaker, R. J., 2021, In: Forest Ecology and Management. 483, 15 p., 118765.

Research output: Contribution to journal › Journal article › Research › peer-review

Effects of land-use change on avian taxonomic, functional and phylogenetic diversity in a tropical montane rainforest

Rurangwa, M. L., Aguirre-Gutiérrez, J., Matthews, T. J., Niyigaba, P., Wayman, J. P., Tobias, J. A. & Whittaker, R. J., 2021, In: Diversity and Distributions. 27, 9, p. 1732-1746 15 p.

Research output: Contribution to journal › Journal article › Research › peer-review

The Contribution of Digital Sequence Information to Conservation Biology: A Southern African Perspective

Russo, I. M., De Jager, Deon, van Wyk, A. M., Klopper, A. W., Uiseb, K., Birss, C., Rushworth, I. & Bloomer, P., 2023, In: Advanced Genetics. 4, 2, 3 p., 2200032.

Research output: Contribution to journal › Journal article › Research › peer-review

Diaspora, migration, and the sciences: a new integrated perspective

Rutgers, L., Ostrer, H., Prowse, T. & Schroeder, Hannes, 1 Apr 2019, In: European Journal of Human Genetics. 27, 4, p. 509-510 2 p.

Research output: Contribution to journal › Comment/debate › Research › peer-review

SPIN enables high throughput species identification of archaeological bone by proteomics

Rüther, P. L., Husic, I. M., Bangsgaard, Pernille, Gregersen, K. M., Pantmann, P., Carvalho, M., Godinho, R. M., Friedl, L., Cascalheira, J., Taurozzi, Alberto John, Jørkov, M L S, Benedetti, M. M., Haws, J., Bicho, N., Welker, Frido, Cappellini, Enrico & Olsen, Jesper Velgaard, 2022, In: Nature Communications. 13, 14 p., 2458.

Research output: Contribution to journal › Journal article › Research › peer-review

Approaching sheep herds origins and the emergence of the wool economy in continental Europe during the Bronze Age

Sabatini, S., Bergerbrant, S., Brandt, Luise Ørsted, Margaryan, Ashot & Allentoft, Morten Erik, 2019, In: Archaeological and Anthropological Sciences. 11, 9, p. 4909-4925 17 p.

Research output: Contribution to journal › Journal article › Research › peer-review

A seventeenth-century Mycobacterium tuberculosis genome supports a Neolithic emergence of the Mycobacterium tuberculosis complex

Sabin, S., Herbig, A., Vågene, Åshild Joanne, Ahlström, T., Bozovic, G., Arcini, C., Kühnert, D. & Bos, K. I., 2020, In: Genome Biology. 21, 24 p., 201.

Research output: Contribution to journal › Journal article › Research › peer-review

Plastic and genomic change of a newly established lizard population following a founder event

Sabolić, I., Mira, Ó., Brandt, D. Y. C., Lisičić, D., Stapley, J., Novosolov, Maria, Bakarić, R., Cizelj, I., Glogoški, M., Hudina, T., Taverne, M., Allentoft, Morten Erik, Nielsen, R., Herrel, A. & Štambuk, A., 2024, (E-pub ahead of print) In: Molecular Ecology. 15 p.

Research output: Contribution to journal › Journal article › Research › peer-review

eDNA in subterranean ecosystems: Applications, technical aspects, and future prospects

Saccò, M., Guzik, M. T., van der Heyde, M., Nevill, P., Cooper, S. J. B., Austin, A. D., Coates, P. J., Allentoft, Morten Erik & White, N. E., 2022, In: Science of the Total Environment. 820, 14 p., 153223.

Research output: Contribution to journal › Journal article › Research › peer-review

Groundwater is a hidden global keystone ecosystem

Saccò, M., Mammola, S., Altermatt, F., Alther, R., Bolpagni, R., Brancelj, A., Brankovits, D., Fišer, C., Gerovasileiou, V., Griebler, C., Guareschi, S., Hose, G. C., Korbel, K., Lictevout, E., Malard, F., Martínez, A., Niemiller, M. L., Robertson, A., Tanalgo, K. C., Bichuette, M. E. & 31 others, Borko, Š., Brad, T., Campbell, M. A., Cardoso, P., Celico, F., Cooper, S. J. B., Culver, D., Di Lorenzo, T., Galassi, D. M. P., Guzik, M. T., Hartland, A., Humphreys, W. F., Ferreira, R. L., Lunghi, E., Nizzoli, D., Perina, G., Raghavan, R., Richards, Z., Reboleira, A. S. P. S., Rohde, M. M., Fernández, D. S., Schmidt, S. I., van der Heyde, M., Weaver, L., White, N. E., Zagmajster, M., Hogg, I., Ruhi, A., Gagnon, M. M., Allentoft, Morten Erik & Reinecke, R., 2024, In: Global Change Biology. 30, 1, 21 p., e17066.

Research output: Contribution to journal › Review › Research › peer-review

Salt to conserve: a review on the ecology and preservation of hypersaline ecosystems

Saccò, M., White, N. E., Harrod, C., Salazar, G., Aguilar, P., Cubillos, C. F., Meredith, K., Baxter, B. K., Oren, A., Anufriieva, E., Shadrin, N., Marambio-Alfaro, Y., Bravo-Naranjo, V. & Allentoft, Morten Erik, 2021, In: Biological Reviews. 96, 6, p. 2828-2850 23 p.

Research output: Contribution to journal › Review › Research › peer-review

Metabarcoding under Brine: Microbial Ecology of Five Hypersaline Lakes at Rottnest Island (WA, Australia)

Saccò, M., White, N. E., Campbell, M., Allard, S., Humphreys, W. F., Pringle, P., Sepanta, F., Laini, A. & Allentoft, Morten Erik, 2021, In: Water. 13, 14, 18 p., 1899.

Research output: Contribution to journal › Journal article › Research › peer-review

Origin and diffusion of human Y chromosome haplogroup J1-M267

Sahakyan, H., Margaryan, A., Saag, L., Karmin, M., Flores, R., Haber, M., Kushniarevich, A., Khachatryan, Z., Bahmanimehr, A., Parik, J., Karafet, T., Yunusbayev, B., Reisberg, T., Solnik, A., Metspalu, E., Hovhannisyan, A., Khusnutdinova, E. K., Behar, D. M., Metspalu, M., Yepiskoposyan, L. & 2 others, Rootsi, S. & Villems, R., 2021, In: Scientific Reports. 11, 14 p., 6659.

Research output: Contribution to journal › Journal article › Research › peer-review

Non-avian dinosaur eggshell calcite can contain ancient, endogenous amino acids

Saitta, E. T., Vinther, J., Crisp, M. K., Abbott, G. D., Wheeler, L., Presslee, S., Kaye, T. G., Bull, I., Fletcher, I., Chen, X., Vidal, D., Sanguino, F., Buscalioni, Á. D., Calvo, J., Sereno, P. C., Baumgart, S. L., Pittman, M., Collins, M. J., Sakalauskaite, J., Mackie, M. & 7 others, Bello, F. D., Dickinson, M. R., Stevenson, M. A., Donohoe, P., Heck, P. R., Demarchi, B. & Penkman, K. E. H., 2024, In: Geochimica et Cosmochimica Acta. 365, p. 1-20 20 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Isotope Dichotomy from Solar Protoplanetary Disk Processing of ¹⁵⁰Nd-rich Stellar Ejecta

Saji, N. S., Schiller, Martin, Holst, J. C. & Bizzarro, Martin, 2021, In: The Astrophysical Journal Letters. 919, 8 p., L8.

Research output: Contribution to journal › Journal article › Research › peer-review

Solar system Nd isotope heterogeneity: Insights into nucleosynthetic components and protoplanetary disk evolution

Saji, N. S., Wielandt, D., Holst, J. C. & Bizzarro, Martin, 2020, In: Geochimica et Cosmochimica Acta. 281, p. 135-148 14 p.

Research output: Contribution to journal › Journal article › Research › peer-review

The degradation of intracrystalline mollusc shell proteins: A proteomics study of Spondylus gaederopus

Sakalauskaite, J., Mackie, Meaghan, Taurozzi, Alberto John, Collins, Matthew James, Marin, F. & Demarchi, B., 2021, In: B B A - Proteins and Proteomics. 1869, 12, 19 p., 140718.

Research output: Contribution to journal › Journal article › Research › peer-review

These boots are made for burnin’: Inferring the position of the corpse and the presence of leather footwears during cremation through isotope (δ¹³C, δ¹⁸O) and infrared (FTIR) analyses of experimentally burnt skeletal remains

Salesse, K., Stamataki, E., Kontopoulos, I., Verly, G., Annaert, R., Boudin, M., Capuzzo, G., Claeys, P., Dalle, S., Hlad, M., de Mulder, G., Sabaux, C., Sengeløv, A., Veselka, B., Warmenbol, E., Vercauteren, M. & Snoeck, C., 2021, In: PLoS ONE. 16, 10, 22 p., e0257199.

Research output: Contribution to journal › Journal article › Research › peer-review

Historical specimens and the limits of subspecies phylogenomics in the New World quails (Odontophoridae)

Salter, J. F., Hosner, Peter Andrew, Tsai, W. L. E., McCormack, J. E., Braun, E. L., Kimball, R. T., Brumfield, R. T. & Faircloth, B. C., 2022, In: Molecular Phylogenetics and Evolution. 175, 14 p., 107559.

Research output: Contribution to journal › Journal article › Research › peer-review

Extensive paraphyly in the typical owl family (Strigidae)

Salter, J. F., Oliveros, C. H., Hosner, Peter Andrew, Manthey, J. D., Robbins, M. B., Moyle, R. G., Brumfield, R. T. & Faircloth, B. C., 2020, In: Auk. 137, 1, 15 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Analyses of key genes involved in Arctic adaptation in polar bears suggest selection on both standing variation and de novo mutations played an important role

Samaniego Castruita, J. A., Westbury, Michael Vincent & Lorenzen, Eline, 2020, In: BMC Genomics. 21, 1, 8 p., 543.

Research output: Contribution to journal › Journal article › Research › peer-review

ProAlanase is an Effective Alternative to Trypsin for Proteomics Applications and Disulfide Bond Mapping

Samodova, D., Hosfield, C. M., Cramer, C. N., Giuli, M. V., Cappellini, Enrico, Franciosa, Giulia, Rosenblatt, M. M., Kelstrup, C. D. & Olsen, Jesper Velgaard, 2020, In: Molecular & Cellular Proteomics. 19, 12, 19 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Importance of eDNA taphonomy and sediment provenance for robust ecological inference: Insights from interfacial geochemistry

Sand, Karina Krarup, Jelavić, S., Kjær, Kurt H. & Prohaska, Ana, 2024, In: Environmental DNA. 6, 2, 13 p., e519.

Research output: Contribution to journal › Journal article › Research › peer-review

The ancestry and geographical origins of St Helena's liberated Africans

Sandoval-Velasco, Marcela, Jagadeesan, A., Ramos Madrigal, Jazmin, Ávila-Arcos, M. C., Fortes-Lima, C. A., Watson, J., Johannesdóttir, E., Cruz-Dávalos, D. I., Gopalakrishnan, Shyam, Moreno Mayar, J. Víctor, Niemann, Jonas, Renaud, G., Brown, K. A. R., Bennett, H., Pearson, A., Helgason, A., Gilbert, M Thomas P & Schroeder, Hannes, 2023, In: American Journal of Human Genetics. 110, 9, p. 1590-1599 10 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Hi-C chromosome conformation capture sequencing of avian genomes using the BGISEQ-500 platform

Sandoval-Velasco, Marcela, Rodríguez, Juan Antonio, Estrada, C. P., Zhang, G., Aiden, E. L., Marti-Renom, M. A., Gilbert, M Thomas P & Smith, O., 2020, In: GigaScience. 9, 8, 7 p., giaa087.

Research output: Contribution to journal › Journal article › Research › peer-review

Microstructural and Chemical Investigations of Presolar Silicates from Diverse Stellar Environments

Sanghani, M. N., Lajaunie, L., Marhas, K. K., Rickard, W. D. A., Hsiao, S. S., Peeters, Z., Shang, H., Lee, D., Calvino, J. J. & Bizzarro, Martin, 2022, In: The Astrophysical Journal. 925, 2, 28 p., 110.

Research output: Contribution to journal › Journal article › Research › peer-review

Presolar Silicate and Oxide Grains Found in Lithic Clasts from Isheyevo and the Fine-grained Matrix of Northwest Africa 801

Sanghani, M. N., Marhas, K. K., Hsiao, S. S., Peeters, Z., Shang, H., Lee, D. & Bizzarro, Martin, 2021, In: Astrophysical Journal. 253, 2, 26 p.

Research output: Contribution to journal › Journal article › Research › peer-review

The role of land use and land cover change in climate change vulnerability assessments of biodiversity: a systematic review [incl. correction]

Santos, M. J., Smith, A. B., Dekker, S. C., Eppinga, M. B., Leitão, P. J., Moreno-Mateos, D., Morueta-Holme, Naia & Ruggeri, M., 2021, In: Landscape Ecology. 36, 12, p. 3367-3382 16 p.

Research output: Contribution to journal › Review › Research › peer-review

Specialized microbiomes facilitate natural rhizosphere microbiome interactions counteracting high salinity stress in plants

Santos, S. S., Rask, K. A., Vestergård, M., Johansen, Jesper Liengaard, Priemé, Anders, Frøslev, Tobias Guldberg, González, A. M. M., He, H. & Ekelund, Flemming, 2021, In: Environmental and Experimental Botany. 186, 12 p., 104430.

Research output: Contribution to journal › Journal article › Research › peer-review

Unveiling the ecological applications of Ancient DNA from mollusk shells

Sarkissian, C. D., Möller, P., Hofman, C., Ilsøe, P., Rick, T., Schiøtte, Tom, Sørensen, Martin Vinther, Dalén, L. & Orlando, L. A. A., 2020, In: Frontiers in Ecology and Evolution. 8, 21 p., 37.

Research output: Contribution to journal › Journal article › Research › peer-review

Skmer: assembly-free and alignment-free sample identification using genome skims

Sarmashghi, S., Bohmann, Kristine, Gilbert, M Thomas P, Bafna, V. & Mirarab, S., 2019, In: Genome Biology. 20, 20 p., 34.

Research output: Contribution to journal › Journal article › Research › peer-review

Regional-Scale Analysis of Antimicrobial Usage in Smallholder Cattle Herds (Aosta Valley, Italy): Why Surveillance Matters

Scali, F., Ganio, S., Roullet, C., Ruffier, M., Bergagna, S., Pagliasso, G., Romeo, Claudia Rosa, Formenti, N., Maisano, A. M., Santucci, G., Tonni, M., Guadagno, F., Mazza, F., Guarneri, F., Bontempi, G., Candela, L. & Alborali, G. L., 2024, In: Antibiotics. 13, 3, 14 p., 204.

Research output: Contribution to journal › Journal article › Research › peer-review

Ancient DNA analysis of a nineteenth century tobacco pipe from a Maryland slave quarter

Schablitsky, J. M., Witt, K. E., Ramos Madrigal, Jazmin, Ellegaard, M. R., Malhi, R. S. & Schroeder, Hannes, 2019, In: Journal of Archaeological Science. 105, p. 11-18 8 p.

Research output: Contribution to journal › Journal article › Research › peer-review

The Contribution of Desert-Dwelling Bats to Pest Control in Hyper-Arid Date Agriculture

Schackermann, J., Morris, E. J. J., Alberdi, Antton, Razgour, O. & Korine, C., 2022, In: Diversity. 14, 12, 14 p., 1034.

Research output: Contribution to journal › Journal article › Research › peer-review

Streaming instability of multiple particle species: II. Numerical convergence with increasing particle number

Schaffer, N., Johansen, Anders & Lambrechts, Michiel Thomas A, 2021, In: Astronomy and Astrophysics. 653, 11 p., A14.

Research output: Contribution to journal › Journal article › Research › peer-review

Phylogeny of the orb-weaving spider family Araneidae (Araneae: Araneoidea)

Scharff, Nikolaj, Coddington, J. A., Blackledge, T. A., Agnarsson, I., Framenau, V. W., Szűts, T., Hayashi, C. Y. & Dimitrov, D., 2020, In: Cladistics. 36, 1, p. 1-21

Research output: Contribution to journal › Journal article › Research › peer-review

Diet of seals in the Baltic Sea region: a synthesis of published and new data from 1968 to 2013

Scharff-Olsen, Camilla Hjorth, Galatius, A., Teilmann, J., Dietz, R., Andersen, S. M., Jarnit, S., Kroner, A., Botnen, A. B., Lundström, K., Møller, Peter Rask & Olsen, Morten Tange, 2019, In: I C E S Journal of Marine Science. 76, 1, p. 284-297 14 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Towards understanding interactions between Sustainable Development Goals: the role of environment–human linkages

Scharlemann, J. P. W., Brock, R. C., Balfour, N., Brown, C., Burgess, Neil David, Guth, M. K., Ingram, D. J., Lane, R., Martin, J. G. C., Wicander, S. & Kapos, V., 2020, In: Sustainability Science. 12 p.

Research output: Contribution to journal › Journal article › Research › peer-review

A strategic model of a host-microbe-microbe system reveals the importance of a joint host-microbe immune response to combat stress-induced gut dysbiosis

Scheuring, I., Rasmussen, Jacob Agerbo, Bozzi, D. & Limborg, Morten Tønsberg, 2022, In: Frontiers in Microbiology. 13, 12 p., 912806.

Research output: Contribution to journal › Journal article › Research › peer-review

A re-evaluation of the Hart Ash, an important stratigraphic marker: Wright Valley, Antarctica

Schiller, Martin, Dickinson, W. W., Iverson, N. A. & Baker, J. A., Jun 2019, In: Antarctic Science. 31, 3, p. 139-149 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Iron isotope evidence for very rapid accretion and differentiation of the proto-Earth

Schiller, Martin, Bizzarro, Martin & Siebert, J., 2020, In: Science Advances. 6, 7, 8 p., eaay7604.

Research output: Contribution to journal › Journal article › Research › peer-review

Taxonomy and phylogeny of the phlegmacioid clade Camptori (Cortinarius s.l., Basidiomycota) in Europe with description of four new species

Schmidt-Stohn, G., Brandrud, T. E., Bellanger, J., Saar, G., Ballarà, J., Armada, F., Albert, L., Frøslev, Tobias Guldberg & Dima, B., 2022, In: Mycological Progress. 21, 6, 21 p., 55.

Research output: Contribution to journal › Journal article › Research › peer-review

Postglacial relative sea level change and glacier activity in the early and late Holocene: Wahlenbergfjorden, Nordaustlandet, Svalbard

Schomacker, A., Farnsworth, W. R., Ingólfsson, Ó., Allaart, L., Håkansson, L., Retelle, M., Siggaard-Andersen, Marie-Louise, Korsgaard, N. J., Rouillard, Alexandra & Kjellman, S. E., 1 Dec 2019, In: Scientific Reports. 9, 1, 13 p., 6799.

Research output: Contribution to journal › Journal article › Research › peer-review

Indirect paths from genetics to education

Schork, A. J., Peterson, R. E., Dahl, A., Cai, N. & Kendler, K. S., 2022, In: Nature Genetics. 54, 4, p. 372-373 2 p.

Research output: Contribution to journal › Comment/debate › Research › peer-review

Unraveling ancestry, kinship, and violence in a Late Neolithic mass grave

Schroeder, H., Margaryan, A., Szmyt, M., Theulot, B., Włodarczak, P., Rasmussen, S., Gopalakrishnan, S., Szczepanek, A., Konopka, T., Jensen, T. Z. T., Witkowska, B., Wilk, S., Przybyła, M. M., Pospieszny, Ł., Sjögren, K-G., Belka, Z., Olsen, J., Kristiansen, K., Willerslev, E., Frei, K. M. & 3 others, Sikora, Martin, Johannsen, N. N. & Allentoft, Morten Erik, 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 22, p. 10705-10710

Research output: Contribution to journal › Journal article › Research › peer-review

Children's attitudes towards animals are similar across suburban, exurban, and rural areas

Schuttler, S. G., Stevenson, K., Kays, R. & Dunn, Rob, 23 Jul 2019, In: PeerJ. 7, 18 p., 7328.

Research output: Contribution to journal › Journal article › Research › peer-review

Citizen Science in Schools: Students Collect Valuable Mammal Data for Science, Conservation, and Community Engagement

Schuttler, S. G., Sears, R. S., Orendain, I., Khot, R., Rubenstein, D., Rubenstein, N., Dunn, Rob, Baird, E., Kandros, K., O'Brien, T. & Kays, R., 2019, In: BioScience. 69, 1, p. 69-79

Research output: Contribution to journal › Journal article › Research › peer-review

A new species of the genus Verilus (Teleostei, Percomorpha, Acropomatidae) from Brazil

Schwarzhans, W. W., Mincarone, M. M. & Villarins, B. T., 2020, In: Zootaxa. 4751, 3, p. 589-596 8 p.

Research output: Contribution to journal › Journal article › Research › peer-review

First record of otoliths from the Eocene of Western Siberia

Schwarzhans, W. W., Smirnov, P., Trubin, Y. S. & Ordovsky, V., 2021, In: Cybium. 45, 1, p. 79-80 2 p.

Research output: Contribution to journal › Journal article › Research › peer-review

The coexistence of the streaming instability and the vertical shear instability in protoplanetary disks: Planetesimal formation thresholds explored in two-dimensional global models

Dannenberg, Urs & Johansen, Anders, 2022, In: Astronomy & Astrophysics. 666, 17 p., A98.

Research output: Contribution to journal › Journal article › Research › peer-review

Genomic ancestry, diet and microbiomes of Upper Palaeolithic hunter-gatherers from San Teodoro cave (Sicily, Italy)

Scorrano, Gabriele, Nielsen, Sofie Holtsmark, Vetro, D. L., Sawafuji, R., Mackie, Meaghan, Margaryan, Ashot, Fotaki, Anna Katerina, Martínez-Labarga, C., Fabbri, P. F., Allentoft, Morten Erik, Carra, M., Martini, F., Rickards, O., Olsen, Jesper Velgaard, Pedersen, Mikkel Winther, Cappellini, Enrico & Sikora, Martin, 2022, In: Communications Biology. 5

Research output: Contribution to journal › Journal article › Research › peer-review