Tom Gilbert

Tom Gilbert

Professor

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    ORCID: 0000-0002-5805-7195

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    1. Published

      Scrutinizing key steps for reliable metabarcoding of environmental samples

      Alberdi, Antton, Aizpurua Arrieta, Ostaizka, Gilbert, M Thomas P & Bohmann, Kristine, 2018, In: Methods in Ecology and Evolution. 9, 1, p. 134-147 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    2. Published

      Second generation sequencing and morphological faecal analysis reveal unexpected foraging behaviour by Myotis nattereri (Chiroptera, Vespertilionidae) in winter

      Hope, P. R., Bohmann, Kristine, Gilbert, M Thomas P, Zepeda Mendoza, M. L., Razgour, O. & Jones, G., 2014, In: Frontiers in Zoology. 11, 15 p., 39.

      Research output: Contribution to journal › Journal article › Research › peer-review

    3. Published

      Sequences of microvariant/“off-ladder” STR alleles

      Rockenbauer, Eszter, Holgersson, M., Fordyce, S. L., Avila Arcos, M. D. C., Børsting, Claus, Hansen, Anders Johannes, Frank-Hansen, R., Willerslev, Eske, Gilbert, M Thomas P & Morling, Niels, 2011, In: Forensic Science International: Genetics Supplement Series. 3, 1, p. e204-e205 2 p.

      Research output: Contribution to journal › Conference article › Research › peer-review

    4. Published

      Single-tube library preparation for degraded DNA

      Carøe, C., Gopalakrishnan, Shyam, Vinner, Lasse, Mak, Sarah Siu Tze, Sinding, Mikkel Holger Strander, Samaniego, J. A., Wales, N., Sicheritz-Ponten, T. & Gilbert, M Thomas P, 2018, In: Methods in Ecology and Evolution. 9, 2, p. 410-419 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    5. Published

      Skmer: assembly-free and alignment-free sample identification using genome skims

      Sarmashghi, S., Bohmann, Kristine, Gilbert, M Thomas P, Bafna, V. & Mirarab, S., 2019, In: Genome Biology. 20, 20 p., 34.

      Research output: Contribution to journal › Journal article › Research › peer-review

    6. Published

      Specialized sledge dogs accompanied Inuit dispersal across the North American Arctic

      Ameen, C., Feuerborn, T. R., Brown, S. K., Linderholm, A., Hulme-Beaman, A., Lebrasseur, O., Sinding, M-H. S., Lounsberry, Z. T., Lin, A. T., Appelt, M., Bachmann, L., Betts, M., Britton, K., Darwent, J., Dietz, R., Fredholm, M., Gopalakrishnan, S., Goriunova, O. I., Grønnow, B., Haile, J. & 39 others, Hallsson, J. H., Harrison, R., Heide-Jørgensen, M. P., Knecht, R., Losey, R. J., Masson-MacLean, E., McGovern, T. H., McManus-Fry, E., Meldgaard, Morten, Midtdal, Å., Moss, M. L., Nikitin, I. G., Nomokonova, T., Pálsdóttir, A. H., Perri, A., Popov, A. N., Rankin, L., Reuther, J. D., Sablin, M., Schmidt, A. L., Shirar, S., Smiarowski, K., Sonne, C., Stiner, M. C., Vasyukov, M., West, C. F., Ween, G. B., Wennerberg, S. E., Wiig, Ø., Woollett, J., Dalén, L., Hansen, Anders Johannes, Gilbert, M Thomas P, Sacks, B. N., Frantz, L., Larson, G., Dobney, K., Darwent, C. M. & Evin, A., 2019, In: Proceedings. Biological sciences. 286, 1916, p. 20191929

      Research output: Contribution to journal › Journal article › Research › peer-review

    7. Published

      Speciation and demographic history of Atlantic eels (Anguilla anguilla and A. rostrata) revealed by mitogenome sequencing

      Jacobsen, M. W., Pujolar, J. M., Gilbert, M Thomas P, Moreno Mayar, J. Víctor, Bernatchez, L., Als, T. D., Lobon-Cervia, J. & Hansen, M. M., 2014, In: Heredity. 113, p. 432-442 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    8. Published

      Species-specific responses of Late Quaternary megafauna to climate and humans

      Lorenzen, E., Nogues, D. B., Orlando, L. A. A., Weinstock Arenovitz, J., Binladen, J. K. M. A., Marske, K. A., Ugan, A., Borregaard, M. K., Gilbert, M. T. P., Nielsen, R., Ho, S. Y. W., Goebel, T., Graf, K. E., Byers, D., Stenderup, J., Rasmussen, M., Campos, P., Leonard, J. A., Koepfli, K-P., Froese, D. & 35 others, Zazula, G., Stafford jr., T., Aaris-Sørensen, Kim, Batra, P., Haywood, A. M., Singarayer, J. S., Valdes, P. J., Boeskorov, G., Burns, J. A., Davydov, S. P., Haile, James Seymour, Jenkins, D. L., Kosintsev, P., Kuznetsova, T., Lai, X., Martin, L. D., McDonald, H. G., Mol, D., Meldgaard, Morten, Munch, K., Stephan, E., Sablin, M., Sommer, R. S., Sipko, T., Scott, E., Suchard, M. A., Tikhonov, A., Willerslev, R., Wayne, R. K., Cooper, A., Hofreiter, M., Sher, A., Shapiro, B., Rahbek, Carsten & Willerslev, Eske, 2011, In: Nature. 479, 7373, p. 359-364 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    9. Published

      Species-specific traits mediate avian demographic responses under past climate change

      Germain, Ryan Ross, Feng, S., Chen, G., Graves, G. R., Tobias, J. A., Rahbek, Carsten, Lei, F., Fjeldså, Jon, Hosner, Peter Andrew, Gilbert, M Thomas P, KU, thw266 & Nogues, David Bravo, 2022, bioRxiv, 24 p.

      Research output: Working paper › Preprint

    10. Published

      Species-specific traits mediate avian demographic responses under past climate change

      Germain, Ryan Ross, Feng, S., Chen, G., Graves, G. R., Tobias, J. A., Rahbek, Carsten, Lei, F., Fjeldså, Jon, Hosner, Peter Andrew, Gilbert, M Thomas P, KU, thw266 & Nogues, David Bravo, 2023, In: Nature Ecology and Evolution. 7, 6, p. 862-872 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    11. Published

      Stable isotope and DNA evidence for ritual sequences in Inca child sacrifice.

      Wilson, A. S., Taylor, T., Ceruti, M. C., Chavez, J. A., Reinhard, J., Grimes, V., Meier-Augenstein, W., Cartmell, L., Stern, B., Richards, M. P., Worobey, M., Barnes, I. & Gilbert, M Thomas P, 2007, In: Proceedings of the National Academy of Science of the United States of America. 104, 42, p. 16456-61 5 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    12. Published

      Statistical analysis of post mortem DNA damage-derived miscoding lesions in Neandertal mitochondrial DNA

      Vives, S., Gilbert, M Thomas P, Arenas, C., Gigli, E., Lao, O. & Lalueza-Fox, C., 2008, In: BMC Research Notes. 1, p. 40

      Research output: Contribution to journal › Journal article › Research › peer-review

    13. Published

      Statistical guidelines for detecting past population shifts using ancient DNA

      Mourier, T., Ho, S. Y. W., Gilbert, M Thomas P, Willerslev, Eske & Orlando, L. A. A., 16 Mar 2012, In: Molecular Biology and Evolution. 29, 9, p. 2241-2251 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    14. Published

      Stone Age “chewing gum” yields 5,700 yearold human genome and oral microbiome

      Jensen, Theis Zetner Trolle, Niemann, Jonas, Iversen, K. H., Fotaki, Anna Katerina, Gopalakrishan, S., Sinding, Mikkel Holger Strander, Ellegaard, M. R., Allentoft, Morten Erik, Lanigan, Liam Thomas, Taurozzi, Alberto John, Nielsen, Sofie Holtsmark, Dee, M. W., Mortensen, M. N., Christensen, M. C., Sørensen, S. A., Collins, Matthew James, Gilbert, M Thomas P, Sikora, Martin, Rasmussen, Simon & Schroeder, Hannes, 2018, bioRxiv, 32 p.

      Research output: Working paper › Preprint

    15. Published

      Storytelling and story testing in domestication

      Gerbault, P., Allaby, R. G., Boivin, N., Rudzinski, A., Grimaldi, I. M., Pires, J. C., Climer Vigueira, C., Dobney, K., Gremillion, K. J., Barton, L., Arroyo-Kalin, M., Purugganan, M. D., Rubio de Casas, R., Bollongino, R., Burger, J., Fuller, D. Q., Bradley, D. G., Balding, D. J., Richerson, P. J., Gilbert, M. T. P. & 2 others, Larson, G. & Thomas, M. G., 2014, In: Proceedings of the National Academy of Sciences of the United States of America. 111, 17, p. 6159-6164 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    16. Published

      Tag jumps illuminated - reducing sequence-to-sample misidentifications in metabarcoding studies

      Schnell, I. B., Bohmann, Kristine & Gilbert, M Thomas P, 2015, In: Molecular Ecology Resources. 15, 6, p. 1289-1303 15 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    17. Published

      Taxonomic and Functional Characterization of the Microbial Community During Spontaneous in vitro Fermentation of Riesling Must

      Sirén, K., Mak, Sarah Siu Tze, Melkonian, C., Carøe, C., Swiegers, J. H., Molenaar, D., Fischer, U. & Gilbert, M Thomas P, 2019, In: Frontiers in Microbiology. 10, 17 p., 697.

      Research output: Contribution to journal › Journal article › Research › peer-review

    18. Published

      Testosterone in ancient hair from an extinct species

      Koren, L., Matas, D., Pečnerová, P., Dalén, L., Tikhonov, A., Gilbert, M Thomas P, Wynne-edwards, K. E. & Geffen, E., 1 Nov 2018, In: Special Papers in Palaeontology. 61, 6, p. 797-802

      Research output: Contribution to journal › Journal article › Research › peer-review

    19. Published

      The 'relics of Joan of Arc': a forensic multidisciplinary analysis

      Charlier, P., Poupon, J., Eb, A., De Mazancourt, P., Gilbert, M Thomas P, Huynh-Charlier, I., Loublier, Y., Verhille, A. M., Moulheirat, C., Patou-Mathis, M., Robbiola, L., Montagut, R., Masson, F., Etcheberry, A., Brun, L., Willerslev, Eske, de la Grandmaison, G. L. & Durigon, M., 2010, In: Forensic Science International. 194, 1-3, p. e9-15 7 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    20. Published

      The Australian dingo is an early offshoot of modern breed dogs

      Field, M. A., Yadav, S., Dudchenko, O., Esvaran, M., Rosen, B. D., Skvortsova, K., Edwards, R. J., Keilwagen, J., Cochran, B. J., Manandhar, B., Bustamante, S., Rasmussen, J. A., Melvin, R. G., Chernoff, B., Omer, A., Colaric, Z., Chan, E. K. F., Minoche, A. E., Smith, T. P. L., Gilbert, M. T. P. & 5 others, Bogdanovic, O., Zammit, R. A., Thomas, T., Aiden, E. L. & Ballard, J. W. O., 2022, In: Science Advances. 8, 16, 14 p., eabm5944.

      Research output: Contribution to journal › Journal article › Research › peer-review

    21. Published

      The Draft Genome of Extinct European Aurochs and its Implications for De-Extinction

      Gilbert, M Thomas P & Sinding, Mikkel Holger Strander, 2016, In: Open Quaternary. 2, 9 p., 7.

      Research output: Contribution to journal › Journal article › Research › peer-review

    22. Published

      The Earth BioGenome Project 2020: Starting the clock

      Lewin, H. A., Richards, S., Aiden, E. L., Allende, M. L., Archibald, J. M., Bálint, M., Barker, K. B., Baumgartner, B., Belov, K., Bertorelle, G., Blaxter, M. L., Cai, J., Caperello, N. D., Carlson, K., Castilla-Rubio, J. C., Chaw, S. M., Chen, L., Childers, A. K., Coddington, J. A., Conde, D. A. & 65 others, Corominas, M., Crandall, K. A., Crawford, A. J., DiPalma, F., Durbin, R., Ebenezer, T. E., Edwards, S. V., Fedrigo, O., Flicek, P., Formenti, G., Gibbs, R. A., Gilbert, M Thomas P, Goldstein, M. M., Graves, J. M., Greely, H. T., Grigoriev, I. V., Hackett, K. J., Hall, N., Haussler, D., Helgen, K. M., Hogg, C. J., Isobe, S., Jakobsen, K. S., Janke, A., Jarvis, E. D., Johnson, W. E., Jones, S. J. M., Karlsson, E. K., Kersey, P. J., Kim, J. H., Kress, W. J., Kuraku, S., Lawniczak, M. K. N., Leebens-Mack, J. H., Li, X., Lindblad-Toh, K., Liu, X., Lopez, J. V., Marques-Bonet, T., Mazard, S., Mazet, J. A. K., Mazzoni, C. J., Myers, E. W., O’Neill, R. J., Paez, S., Park, H., Robinson, G. E., Roquet, C., Ryder, O. A., Sabir, J. S. M., Shaffer, H. B., Shank, T. M., Sherkow, J. S., Soltis, P. S., Tang, B., Tedersoo, L., Uliano-Silva, M., Wang, K., Wei, X., Wetzer, R., Wilson, J. L., Xu, X., Yang, H., Yoder, A. D. & KU, thw266, 2022, In: PNAS. 119, 4, 7 p., e2115635118.

      Research output: Contribution to journal › Review › Research › peer-review

    23. Published

      The Farm beneath the Sand: An Archaeological Case Study on Ancient "Dirt" DNA

      Hebsgaard, M. B., Gilbert, M Thomas P, Pedersen, J. A., Heyn, P., Allentoft, Morten Erik, Bunce, M., Munch, K., Schweger, C. & Willerslev, Eske, 2009, In: Antiquity. 83, p. 430-444 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    24. Published

      The Founding Feathers: The true ancestry of the domestic Barbary Dove

      van Grouw, H., Hernández-Alonso, G., Cavill, Emily Louisa & Gilbert, M Thomas P, 2023, In: Bulletin of the British Ornithologists' Club. 143, 2, p. 153-171 19 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    25. Published

      The Genome 10K Project: a way forward

      Koepfli, K-P., Paten, B., O'Brien, S. J., Antunes, A., Belov, K., Bustamante, C., Castoe, T. A., Clawson, H., Crawford, A. J., Diekhans, M., Distel, D., Durbin, R., Earl, D., Fujita, M. K., Gamble, T., Georges, A., Gemmell, N., Gilbert, M. T. P., Graves, J. M., Green, R. E. & 25 others, Hickey, G., Jarvis, E. D., Johnson, W., Komissarov, A., Korf, I., Kuhn, R., Larkin, D. M., Lewin, H., Lopez, J. V., Ma, J., Marques-Bonet, T., Miller, W., Murphy, R., Pevzner, P., Shapiro, B., Steiner, C., Tamazian, G., Venkatesh, B., Wang, J., Wayne, R., Wiley, E., Yang, H., KU, thw266, Haussler, D. & Ryder, O., 2015, In: Annual Review of Animal Biosciences. 3, p. 57-111 55 p.

      Research output: Contribution to journal › Review › Research › peer-review

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    ID: 12980