Shyam Gopalakrishnan

Shyam Gopalakrishnan

Associate Professor

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    ORCID: 0000-0002-2004-6810

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    1. Published

      eDNA‐based biomonitoring at an experimental German vineyard to characterize how management regimes shape ecosystem diversity

      Rasmussen, Jacob Agerbo, Nielsen, M., Mak, Sarah Siu Tze, Döring, J., Klincke, F., Gopalakrishnan, Shyam, Dunn, Rob, Kauer, R. & Gilbert, M Thomas P, 2021, In: Environmental DNA. 3, 1, p. 70-82 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    2. Published

      Whole-Genome Sequencing of African Dogs Provides Insights into Adaptations against Tropical Parasites

      Liu, Y., Wang, L., Xu, T., Guo, X., Li, Y., Yin, T., Yang, H., Hu, Y., Adeola, A. C., Sanke, O. J., Otecko, N. O., Wang, M., Ma, Y., Charles, O. S., Sinding, M. S., Gopalakrishnan, S., Alfredo Samaniego, J., Hansen, A. J., Fernandes, C., Gaubert, P. & 10 others, Budd, J., Dawuda, P. M., Knispel Rueness, E., Jiang, L., Zhai, W., Gilbert, M Thomas P, Peng, M., Qi, X., Wang, G. & Zhang, Y., 1 Feb 2018, In: MOLECULAR BIOLOGY AND EVOLUTION . 35, 2, p. 287-298

      Research output: Contribution to journal › Letter › Research › peer-review

    3. Published

      Using DNA metabarcoding for simultaneous inference of common vampire bat diet and population structure

      Bohmann, Kristine, Gopalakrishnan, Shyam, Nielsen, M., Santos-Bay, Luisa, Jones, G., Streicker, D. G. & Gilbert, M Thomas P, 2018, In: Molecular Ecology Resources. 18, 5, p. 1050-1063 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    4. Published

      Unraveling ancestry, kinship, and violence in a Late Neolithic mass grave

      Schroeder, H., Margaryan, A., Szmyt, M., Theulot, B., Włodarczak, P., Rasmussen, S., Gopalakrishnan, S., Szczepanek, A., Konopka, T., Jensen, T. Z. T., Witkowska, B., Wilk, S., Przybyła, M. M., Pospieszny, Ł., Sjögren, K-G., Belka, Z., Olsen, J., Kristiansen, K., Willerslev, E., Frei, K. M. & 3 others, Sikora, Martin, Johannsen, N. N. & Allentoft, Morten Erik, 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 22, p. 10705-10710

      Research output: Contribution to journal › Journal article › Research › peer-review

    5. Published

      Uncovering the genomic basis of an extraordinary plant invasion

      Bieker, V. C., Battlay, P., Petersen, B., Sun, X., Wilson, J., Brealey, J. C., Bretagnolle, F., Nurkowski, K., Lee, C., Barreiro, F. S., Owens, G. L., Lee, J. Y., Kellner, F. L., van Boheeman, L., Gopalakrishnan, S., Gaudeul, M., Mueller-Schaerer, H., Lommen, S., Karrer, G., Chauvel, B. & 8 others, Sun, Y., Kostantinovic, B., Dalén, L., Poczai, P., Rieseberg, L. H., Gilbert, M Thomas P, Hodgins, K. A. & Martin, M. D., 2022, In: Science Advances. 8, 34, 18 p., eabo5115.

      Research output: Contribution to journal › Journal article › Research › peer-review

    6. Published

      Uncovering neutral and adaptive genomic differentiation among European perch with brackish water and freshwater origin in the western Baltic Sea region

      Skovrind, Mikkel, Antunes Pacheco, George, Christensen, E. A. F., Gopalakrishnan, Shyam, Fietz, K., Holm-Hansen, T. H., Vieira, Filipe Garrett, Krag, M. A., Carl, Henrik, Gilbert, M Thomas P, Olsen, Morten Tange & Møller, Peter Rask, 2023, In: Fisheries Research. 268, 11 p., 106846.

      Research output: Contribution to journal › Journal article › Research › peer-review

    7. Published

      Travel Tales of a Worldwide Weed: Genomic Signatures of Plantago major L. Reveal Distinct Genotypic Groups With Links to Colonial Trade Routes

      Iwanycki Ahlstrand, N., Gopalakrishnan, S., Vieira, F. G., Bieker, V. C., Meudt, H. M., Dunbar-Co, S., Rothfels, C. J., Martinez-Swatson, K. A., Maldonado, C., Hassemer, G., Shipunov, A., Bowers, M. D., Gardner, E., Xu, M., Ghorbani, A., Amano, M., Grace, O. M., Pringle, J. S., Bishop, M., Manzanilla, V. & 18 others, Cotrim, H., Blaney, S., Zubov, D., Choi, H., Yesil, Y., Bennett, B., Vimolmangkang, S., El-Seedi, H. R., Staub, P. O., Li, Z., Boldbaatar, D., Hislop, M., Caddy, L. J., Muasya, A. M., Saslis-Lagoudakis, C. H., Gilbert, M Thomas P, Zerega, N. J. C. & Rønsted, Nina, 2022, In: Frontiers in Plant Science. 13, 16 p., 838166.

      Research output: Contribution to journal › Journal article › Research › peer-review

    8. Published

      The wolf reference genome sequence (Canis lupus lupus) and its implications for Canis spp. population genomics

      Gopalakrishnan, Shyam, Samaniego Castruita, J. A., Sinding, Mikkel Holger Strander, Kuderna, L. F. K., Räikkönen, J., Petersen, Bent, Sicheritz-Pontén, T., Larson, G., Orlando, L. A. A., Marques-Bonet, T., Hansen, Anders Johannes, Dalén, L. & Gilbert, M Thomas P, 2017, In: BMC Genomics. 18, 11 p., 495.

      Research output: Contribution to journal › Journal article › Research › peer-review

    9. Published

      The rise of genomics in snake venom research: recent advances and future perspectives

      Rao, W. Q., Kalogeropoulos, K., Allentoft, Morten Erik, Gopalakrishnan, Shyam, Zhao, W., Workman, C. T., Knudsen, C., Jiménez-Mena, B., Seneci, L., Mousavi-Derazmahalleh, M., Jenkins, T. P., Rivera-de-Torre, E., Liu, S. Q. & Laustsen, A. H., 2022, In: GigaScience. 11, 16 p., giac024.

      Research output: Contribution to journal › Journal article › Research › peer-review

    10. Published

      The population genomic legacy of the second plague pandemic

      Gopalakrishnan, S., Ebenesersdóttir, S. S., Lundstrøm, I. K. C., Turner-Walker, G., Moore, K. H. S., Luisi, P., Margaryan, A., Martin, M. D., Ellegaard, M. R., Magnússon, Ó., Sigurðsson, Á., Snorradóttir, S., Magnúsdóttir, D. N., Laffoon, J. E., van Dorp, L., Liu, X., Moltke, I., Ávila-Arcos, M. C., Schraiber, J. G., Rasmussen, S. & 40 others, Juan, D., Gelabert, P., de-Dios, T., Fotaki, Anna Katerina, Iraeta Orbegozo, Miren, Vågene, Åshild Joanne, Denham, S. D., Christophersen, A., Stenøien, H. K., Vieira, Filipe Garrett, Liu, Shanlin, Günther, T., Kivisild, T., Moseng, O. G., Skar, B., Cheung, C., Sandoval-Velasco, Marcela, Wales, N., Schroeder, Hannes, Campos, P. F., Guðmundsdóttir, V. B., Sicheritz-Pontén, Thomas, Petersen, Bent, Halgunset, J., Gilbert, E., Cavalleri, G. L., Hovig, E., Kockum, I., Olsson, T., Alfredsson, L., Hansen, Thomas Folkmann, Werge, Thomas, Willerslev, Eske, Balloux, F., Marques-Bonet, T., Lalueza-Fox, C., Nielsen, Rasmus, Stefánsson, K., Helgason, A. & Gilbert, M Thomas P, 2022, In: Current Biology. 32, 21, p. 4743-4751.e6

      Research output: Contribution to journal › Journal article › Research › peer-review

    11. Published

      The history of Coast Salish “woolly dogs” revealed by ancient genomics and Indigenous Knowledge

      Lin, A. T., Hammond-Kaarremaa, L., Liu, H-L., Stantis, C., McKechnie, I., Pavel, M., Pavel, S. S. M., Wyss, S. S., Sparrow, D. Q., Carr, K., Aninta, S. G., Perri, A., Hartt, J., Bergström, A., Carmagnini, A., Charlton, S., Dalén, L., Feuerborn, T. R., France, C. A. M., Gopalakrishnan, S. & 13 others, Grimes, V., Harris, A., Kavich, G., Sacks, B. N., Sinding, Mikkel Holger Strander, Skoglund, P., Stanton, D. W. G., Ostrander, E. A., Larson, G., Armstrong, C. G., Frantz, L. A. F., Hawkins, M. T. R. & Kistler, L., 2023, In: Science. 382, 6676, p. 1303-1309 7 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    12. Published

      The genome sequence of the grey wolf, Canis lupus Linnaeus 1758

      Sinding, Mikkel Holger Strander, Gopalakrishnan, Shyam, Raundrup, K., Dalén, L., Threlfall, J., Gilbert, M Thomas P, Darwin Tree of Life Barcoding collective, D. T. O. L. B. C., Wellcome Sanger Institute Tree of Life programme, W. S. I. T. O. L. P., Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective, W. S. I. S. O. D. P. C. & Tree of Life Core Informatics collective, Darwin Tree of Life Consortium, T. O. L. C. I. C. D. T. O. L. C., 2021, In: Wellcome Open Research. 6, 12 p., 310.

      Research output: Contribution to journal › Journal article › Research › peer-review

    13. Published

      The genetic origins of Saint Helena’s liberated Africans

      Sandoval-Velasco, Marcela, Jagadeesan, A., Ávila-Arcos, M. C., Gopalakrishnan, Shyam, Ramos Madrigal, Jazmin, Moreno Mayar, J. Víctor, Renaud, Gabriel, Cruz-Dávalos, D. I., Johannesdóttir, E., Watson, J., Robson-Brown, K., Pearson, A., Helgason, A., Gilbert, M Thomas P & Schroeder, Hannes, 2019, bioRxiv, 16 p.

      Research output: Working paper › Preprint

    14. Published

      The genetic history of Scandinavia from the Roman Iron Age to the present

      Rodríguez-Varela, R., Moore, K. H. S., Ebenesersdóttir, S. S., Kilinc, G. M., Kjellström, A., Papmehl-Dufay, L., Alfsdotter, C., Berglund, B., Alrawi, L., Kashuba, N., Sobrado, V., Lagerholm, V. K., Gilbert, E., Cavalleri, G. L., Hovig, E., Kockum, I., Olsson, T., Alfredsson, L., Hansen, T. F., Werge, T. & 24 others, Munters, A. R., Bernhardsson, C., Skar, B., Christophersen, A., Turner-Walker, G., Gopalakrishnan, Shyam, Daskalaki, E., Omrak, A., Pérez-Ramallo, P., Skoglund, P., Girdland-Flink, L., Gunnarsson, F., Hedenstierna-Jonson, C., Gilbert, M Thomas P, Lidén, K., Jakobsson, M., Einarsson, L., Victor, H., Krzewińska, M., Zachrisson, T., Storå, J., Stefánsson, K., Helgason, A. & Götherström, A., 2023, In: Cell. 186, 1, p. 32-46.e19

      Research output: Contribution to journal › Journal article › Research › peer-review

    15. Published

      The extinct Sicilian wolf shows a complex history of isolation and admixture with ancient dogs

      Ciucani, M. M., Ramos-Madrigal, J., Hernández-Alonso, G., Carmagnini, A., Aninta, S. G., Sun, X., Scharff-Olsen, C. H., Lanigan, L. T., Fracasso, I., Clausen, C. G., Aspi, J., Kojola, I., Baltrūnaitė, L., Balčiauskas, L., Moore, J., Åkesson, M., Saarma, U., Hindrikson, M., Hulva, P., Bolfíková, B. Č. & 19 others, Nowak, C., Godinho, R., Smith, S., Paule, L., Nowak, S., Mysłajek, R. W., Lo Brutto, S., Ciucci, P., Boitani, L., Vernesi, C., Stenøien, H. K., Smith, O., Frantz, L., Rossi, L., Angelici, F. M., Cilli, E., Sinding, Mikkel Holger Strander, Gilbert, M Thomas P & Gopalakrishnan, Shyam, 2023, In: iScience. 26, 8, 22 p., 107307.

      Research output: Contribution to journal › Journal article › Research › peer-review

    16. Published

      The evolutionary history of extinct and living lions

      de Manuel, M., Barnett, R., Sandoval-Velasco, M., Yamaguchi, N., Vieira, F. G., Mendoza, M. L. Z., Liu, S., Martin, M. D., Sinding, M-H. S., Mak, S. S. T., Caroe, C., Liu, S., Guo, C., Zheng, J., Zazula, G., Baryshnikov, G., Eizirik, E., Koepfli, K-P., Johnson, W. E., Antunes, A. & 9 others, Sicheritz-Pontén, Thomas, Gopalakrishnan, Shyam, Larson, G., Yang, H., O'Brien, S. J., Hansen, Anders Johannes, KU, thw266, Marques-Bonet, T. & Gilbert, M Thomas P, 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 20, p. 10927-10934 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    17. Published

      The evolutionary history of dogs in the Americas

      Leathlobhair, M. N., Perri, A. R., Irving-Pease, E. K., Witt, K. E., Linderholm, A., Haile, J., Lebrasseur, O., Ameen, C., Blick, J., Boyko, A. R., Brace, S., Cortes, Y. N., Crockford, S. J., Devault, A., Dimopoulos, E. A., Eldridge, M., Enk, J., Gopalakrishnan, S., Gori, K., Grimes, V. & 30 others, Guiry, E., Hansen, Anders Johannes, Hulme-Beaman, A., Johnson, J., Kitchen, A., Kasparov, A. K., Kwon, Y., Nikolskiy, P. A., Lope, C. P., Manin, A., Martin, T., Meyer, M., Myers, K. N., Omura, M., Rouillard, J., Pavlova, E. Y., Sciulli, P., Sinding, M. S., Strakova, A., Ivanova, V. V., Widga, C., Willerslev, Eske, Pitulko, V. V., Barnes, I., Gilbert, M Thomas P, Dobney, K. M., Malhi, R. S., Murchison, E. P., Larson, G. & Frantz, L. A. F., 2018, In: Science. 361, 6397, p. 81-85 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    18. Published

      The ancestry and geographical origins of St Helena's liberated Africans

      Sandoval-Velasco, Marcela, Jagadeesan, A., Ramos Madrigal, Jazmin, Ávila-Arcos, M. C., Fortes-Lima, C. A., Watson, J., Johannesdóttir, E., Cruz-Dávalos, D. I., Gopalakrishnan, Shyam, Moreno Mayar, J. Víctor, Niemann, Jonas, Renaud, G., Brown, K. A. R., Bennett, H., Pearson, A., Helgason, A., Gilbert, M Thomas P & Schroeder, Hannes, 2023, In: American Journal of Human Genetics. 110, 9, p. 1590-1599 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    19. Published

      Specialized sledge dogs accompanied Inuit dispersal across the North American Arctic

      Ameen, C., Feuerborn, T. R., Brown, S. K., Linderholm, A., Hulme-Beaman, A., Lebrasseur, O., Sinding, M-H. S., Lounsberry, Z. T., Lin, A. T., Appelt, M., Bachmann, L., Betts, M., Britton, K., Darwent, J., Dietz, R., Fredholm, M., Gopalakrishnan, S., Goriunova, O. I., Grønnow, B., Haile, J. & 39 others, Hallsson, J. H., Harrison, R., Heide-Jørgensen, M. P., Knecht, R., Losey, R. J., Masson-MacLean, E., McGovern, T. H., McManus-Fry, E., Meldgaard, Morten, Midtdal, Å., Moss, M. L., Nikitin, I. G., Nomokonova, T., Pálsdóttir, A. H., Perri, A., Popov, A. N., Rankin, L., Reuther, J. D., Sablin, M., Schmidt, A. L., Shirar, S., Smiarowski, K., Sonne, C., Stiner, M. C., Vasyukov, M., West, C. F., Ween, G. B., Wennerberg, S. E., Wiig, Ø., Woollett, J., Dalén, L., Hansen, Anders Johannes, Gilbert, M Thomas P, Sacks, B. N., Frantz, L., Larson, G., Dobney, K., Darwent, C. M. & Evin, A., 2019, In: Proceedings. Biological sciences. 286, 1916, p. 20191929

      Research output: Contribution to journal › Journal article › Research › peer-review

    20. Published

      Single-tube library preparation for degraded DNA

      Carøe, C., Gopalakrishnan, Shyam, Vinner, Lasse, Mak, Sarah Siu Tze, Sinding, Mikkel Holger Strander, Samaniego, J. A., Wales, N., Sicheritz-Ponten, T. & Gilbert, M Thomas P, 2018, In: Methods in Ecology and Evolution. 9, 2, p. 410-419 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    21. Published

      Redefining the Evolutionary History of the Rock Dove, Columba livia, Using Whole Genome Sequences

      Hernández Alonso, Germán, Ramos Madrigal, Jazmin, van Grouw, H., Ciucani, Marta Maria, Cavill, Emily Louisa, Sinding, Mikkel Holger Strander, Gopalakrishnan, Shyam, Antunes Pacheco, George & Gilbert, M Thomas P, 2023, In: Molecular Biology and Evolution. 40, 11, 17 p., msad243.

      Research output: Contribution to journal › Journal article › Research › peer-review

    22. Published

      Promises and pitfalls of using high-throughput sequencing for diet analysis

      Alberdi, Antton, Aizpurua Arrieta, Ostaizka, Bohmann, Kristine, Gopalakrishnan, Shyam, Lynggaard, Christina Islas, Nielsen, M. & Gilbert, M Thomas P, Mar 2019, In: Molecular Ecology Resources. 19, 2, p. 327-348

      Research output: Contribution to journal › Review › Research › peer-review

    23. Published

      Probing the genomic limits of de-extinction in the Christmas Island rat

      Lin, J., Duchene, David, Carøe, C., Smith, O., Ciucani, M. M., Niemann, Jonas, Richmond, D., Greenwood, A. D., MacPhee, R., KU, thw266, Gopalakrishnan, Shyam & Gilbert, M Thomas P, 2022, In: Current Biology. 32, 7, p. 1650-1656.e3

      Research output: Contribution to journal › Journal article › Research › peer-review

    24. Published

      Plasmodium vivax Malaria Viewed through the Lens of an Eradicated European Strain

      van Dorp, L., Gelabert, P., Rieux, A., de Manuel, M., de-Dios, T., Gopalakrishnan, Shyam, Caroe, C., Sandoval-Velasco, Marcela, Fregel, R., Olalde, I., Escosa, R., Aranda, C., Huijben, S., Mueller, I., Marques-Bonet, T., Balloux, F., Gilbert, M Thomas P & Lalueza-Fox, C., 2020, In: MOLECULAR BIOLOGY AND EVOLUTION . 37, 3, p. 773-785 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    25. Published

      Pervasive Phylogenomic Incongruence Underlies Evolutionary Relationships in Eyebrights (Euphrasia, Orobanchaceae)

      Garrett, P., Becher, H., Gussarova, G., dePamphilis, C. W., Ness, R. W., Gopalakrishnan, Shyam & Twyford, A. D., 2022, In: Frontiers in Plant Science. 13, 16 p., 869583.

      Research output: Contribution to journal › Journal article › Research › peer-review

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    ID: 140603020