Rasmus Nielsen

Rasmus Nielsen

Professor

ORCID: 0000-0003-0513-6591

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  1. Published

    100 ancient genomes show repeated population turnovers in Neolithic Denmark

    Allentoft, M. E., Sikora, M., Fischer, A., Sjögren, K-G., Ingason, A., Macleod, R., Rosengren, A., Schulz Paulsson, B., Jørkov, M. L. S., Novosolov, M., Stenderup, J., Price, T. D., Mortensen, M. F., Nielsen, A. B., Hede, M. U., Sørensen, L., Nielsen, P. O., Rasmussen, P., Jensen, T. Z. T., Refoyo-Martínez, A. & 48 others, Irving-Pease, Evan, Barrie, William, Pearson, A., Sousa da Mota, B., Demeter, Fabrice, Henriksen, Rasmus Henrik Amund, Vimala, Tharsika, McColl, Hugh, Vaughn, Andrew Howland, Vinner, Lasse, Renaud, Gabriel, Stern, A., Johannsen, N. N., Ramsøe, Abigail Daisy, Schork, A. J., Ruter, Anthony Henry, Gotfredsen, Anne Birgitte, Nielsen, B. H., Petersen, Erik Brinch, Kannegaard, E., Hansen, J., Pedersen, K. B., Pedersen, L., Klassen, L., Meldgaard, Morten, Johansen, M., Uldum, O. C., Lotz, P., Lysdahl, P., Bangsgaard, Pernille, Petersen, P. V., Maring, R., Iversen, Rune, Wåhlin, S., Sørensen, S. A., Andersen, S. H., Jørgensen, T., Lynnerup, Niels, Lawson, D. J., Rasmussen, Simon, Korneliussen, Thorfinn Sand, Kjær, Kurt H., Durbin, R., Nielsen, Rasmus, Delaneau, O., Werge, Thomas, Kristiansen, Kristian & Willerslev, Eske, 2024, In: Nature. 625, 7994, p. 329-337 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    137 ancient human genomes from across the Eurasian steppes

    Damgaard, P. D. B., Marchi, N., Rasmussen, S., Peyrot, M., Renaud, G., Korneliussen, T. S., Moreno-Mayar, J. V., Pedersen, M. W., Goldberg, A., Usmanova, E., Baimukhanov, N., Loman, V., Hedeager, L., Pedersen, A. G., Nielsen, K., Afanasievl, G., Akmatov, K., Aldashev, A., Alpaslan, A., Baimbetov, G. & 55 others, Bazaliiskii, V. I., Beisenov, A., Boldbaatar, B., Boldgiv, B., Dorzhu, C., Ellingvag, S., Erdenebaatar, D., Dajani, R., Dmitriev, E., Evdokimov, V., Frei, K. M., Gromov, A., Goryachev, A., Hakonarson, H., Hegay, T., Khachatryan, Z., Khaskhanov, R., Kitov', E., Kolbina, A., Kubatbek, T., Kukushkin, A., Kukushkin, I., Lau, N., Margaryan, Ashot, Merkyte, Inga, Mertz, I. V., Mertz, V. K., Mijiddorj, E., Moiyesev, V., Mukhtarova, G., Nurmukhanbetov, B., Orozbekova, Z., Panyushkina, I., Pieta, K., Smrčka, V., Shevnina, I., Logvin, A., Sjögren, K., Štolcová, T., Tashbaeva, K., Tkachev, A., Tulegenov, T., Voyakin, D., Yepiskoposyan, L., Undrakhbold, S., Varfolomeev, V., Weber, A., Kradin, N., Allentoft, Morten Erik, Orlando, L. A. A., Nielsen, Rasmus, Sikora, Martin, Heyer, E., Kristiansen, K. & Willerslev, Eske, 2018, In: Nature. 557, 7705, p. 369-374 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    bammds: a tool for assessing the ancestry of low-depth whole-genome data using multidimensional scaling (MDS)

    Malaspinas, A. S., Tange, O., Moreno Mayar, J. Víctor, Rasmussen, M., DiGiorgio, M., Wang, Y., Valdiosera Morales, C. E., Politis, G., Willerslev, Eske & Nielsen, Rasmus, 2014, In: Bioinformatics. 30, 20, p. 2962-2964 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    ngsTools : methods for population genetics analyses from next-generation sequencing data

    Fumagalli, M., Vieira, Filipe Garrett, Linderoth, T. & Nielsen, Rasmus, 2014, In: Bioinformatics. 30, 10, p. 1486-1487 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. A Bayesian Framework for Inferring the Influence of Sequence Context on Point Mutations

    Ling, G., Miller, D., Nielsen, Rasmus & Stern, A., 2020, In: Molecular Biology and Evolution. 37, 3, p. 893-903 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    A Bayesian multilocus association method: allowing for higher-order interaction in association studies

    Albrechtsen, Anders, Castella, S., Andersen, G., Hansen, T., Pedersen, O. & Nielsen, Rasmus, 2007, In: Genetics. 176, 2, p. 1197-208 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    A Scan for Positively Selected Genes in the Genomes of Humans and Chimpanzees

    Nielsen, Rasmus, Bustamente, C., Clark, A. G., Glanowski, S., Sackton, T. B., Hubisz, M. J., Fledel-Alon, A., Tanenbaum, D. M., Civello, D., White, T. J., Sninsky, J. J., Adams, M. D. & Cargill, M., 2005, In: PLoS - Biology. 3, 6, p. e170

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    A draft genome sequence of the elusive giant squid, Architeuthis dux

    da Fonseca, R. R., Couto, A., Machado, A. M., Brejova, B., Albertin, C. B., Silva, F., Gardner, P., Baril, T., Hayward, A., Campos, A., Ribeiro, Â. M., Barrio-Hernandez, I., Hoving, H-J., Tafur-Jimenez, R., Chu, C., Frazão, B., Petersen, B., Peñaloza, F., Musacchia, F., Alexander, G. C. & 24 others, Osório, H., Winkelmann, I., Simakov, O., Rasmussen, Simon, Rahman, M. Z., Pisani, D., Vinther, J., Jarvis, E., KU, thw266, Strugnell, J. M., Castro, L. F. C., Fedrigo, O., Patricio, M., Li, Q., Rocha, S., Antunes, A., Wu, Y., Ma, B., Sanges, R., Vinar, T., Blagoev, B., Sicheritz-Pontén, Thomas, Nielsen, Rasmus & Gilbert, M Thomas P, 2020, In: GigaScience. 9, 1, 12 p., giz152.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. A draft sequence of the neandertal genome

    Green, R. E., Krause, J., Briggs, A. W., Maricic, T., Stenzel, U., Kircher, M., Patterson, N., Li, H., Zhai, W., Fritz, M. H. Y., Hansen, N. F., Durand, E. Y., Malaspinas, A-S., Jensen, J. D., Marques-Bonet, T., Alkan, C., Prüfer, K., Meyer, M., Burbano, H. A., Good, J. M. & 36 others, Schultz, R., Aximu-Petri, A., Butthof, A., Höber, B., Höffner, B., Siegemund, M., Weihmann, A., Nusbaum, C., Lander, E. S., Russ, C., Novod, N., Affourtit, J., Egholm, M., Verna, C., Rudan, P., Brajkovic, D., Kucan, Ž., Gušic, I., Doronichev, V. B., Golovanova, L. V., Lalueza-Fox, C., De La Rasilla, M., Fortea, J., Rosas, A., Schmitz, R. W., Johnson, P. L. F., Eichler, E. E., Falush, D., Birney, E., Mullikin, J. C., Slatkin, M., Nielsen, Rasmus, Kelso, J., Lachmann, M., Reich, D. & Pääbo, S., 2010, In: Science. 328, 5979, p. 710-722 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. A genome-wide scan for signatures of directional selection in domesticated pigs

    Moon, S., Kim, T. H., Lee, K. T., Kwak, W., Lee, T., Lee, S. W., Kim, M. J., Cho, K., Kim, N., Chung, W. H., Sung, S., Park, T., Cho, S., Groenen, M. A. M., Nielsen, Rasmus, Kim, Y. & Kim, H., 25 Feb 2015, In: BMC Genomics. 16, 1, 130.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    A genomic history of aboriginal Australia

    Malaspinas, A. S., Westaway, M. C., Muller, C. E., Sousa, V. C., Lao, O., Alves, I., Bergström, A., Athanasiadis, G., Cheng, J. Y., Crawford, J. E., Heupink, T. H., Macholdt, E., Peischl, S., Rasmussen, S., Schiffels, S., Subramanian, S., Wright, J. L., Albrechtsen, A., Barbieri, C., Dupanloup, I. & 55 others, Eriksson, A., Margaryan, Ashot, Moltke, Ida, Pugach, I., Korneliussen, Thorfinn Sand, Levkivskyi, I. P., Moreno Mayar, J. Víctor, Ni, S., Racimo, F., Sikora, Martin, Xue, Y., Aghakhanian, F. A., Brucato, N., Brunak, Søren, Campos, P., Clark, W., Ellingvåg, S., Fourmile, G., Gerbault, P., Injie, D., Koki, G., Leavesley, M., Logan, B., Lynch, A., Matisoo-Smith, E. A., McAllister, P. J., Mentzer, A. J., Metspalu, M., Migliano, A. B., Murgha, L., Phipps, M. E., Pomat, W., Reynolds, D., Ricaut, F., Siba, P., Thomas, M. G., Wales, T., Wall, C. M., Oppenheimer, S. J., Tyler-Smith, C., Durbin, R., Dortch, J., Manica, A., Schierup, M. H., Foley, R. A., Lahr, M. M., Bowern, C., Wall, J. D., Mailund, T., Stoneking, M., Nielsen, Rasmus, Sandhu, M. S., Excoffier, L., Lambert, D. M. & Willerslev, Eske, 2016, In: Nature. 538, 7624, p. 207-214 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    A hidden Markov model approach for simultaneously estimating local ancestry and admixture time using next generation sequence data in samples of arbitrary ploidy

    Corbett-Detig, R. & Nielsen, Rasmus, 3 Jan 2017, In: PLoS Genetics. 13, 1, 40 p., e1006529.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    A likelihood method for estimating present-day human contamination in ancient male samples using low-depth X-chromosome data

    Moreno-Mayar, J. V., Korneliussen, Thorfinn Sand, Dalal, J., Renaud, Gabriel, Albrechtsen, Anders, Nielsen, Rasmus & Malaspinas, A., 2020, In: Bioinformatics. 36, 3, p. 828-841 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    A likelihood ratio test for species membership based on DNA sequence data

    Matz, M. V. & Nielsen, Rasmus, 2005, In: Philosophical Transactions of the Royal Society of London. Biological Sciences. 360, 1462, p. 1969-1974

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    A method for detecting IBD regions simultaneously in multiple individuals--with applications to disease genetics

    Moltke, Ida, Albrechtsen, Anders, Hansen, Thomas van Overeem, Nielsen, Finn Cilius & Nielsen, Rasmus, 2011, In: Genome Research. 21, 7, p. 1168-80 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. A population phylogenetic view of mitochondrial heteroplasmy

    Wilton, P. R., Zaidi, A., Makova, K. & Nielsen, Rasmus, 2018, In: Genetics. 208, 3, p. 1261-1274 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    A recent bottleneck of Y chromosome diversity coincides with a global change in culture

    Karmin, M., Saag, L., Vicente, M., Wilson Sayres, M. A., Järve, M., Talas, U. G., Rootsi, S., Ilumäe, A-M., Mägi, R., Mitt, M., Pagani, L., Puurand, T., Faltyskova, Z., Clemente, F., Cardona, A., Metspalu, E., Sahakyan, H., Yunusbayev, B., Hudjashov, G., DeGiorgio, M. & 80 others, Loogväli, E., Eichstaedt, C., Eelmets, M., Chaubey, G., Tambets, K., Litvinov, S., Mormina, M., Xue, Y., Ayub, Q., Zoraqi, G., Korneliussen, Thorfinn Sand, Akhatova, F., Lachance, J., Tishkoff, S., Momynaliev, K., Ricaut, F., Kusuma, P., Razafindrazaka, H., Pierron, D., Cox, M. P., Sultana, G. N. N., Willerslev, R., Muller, C., Westaway, M., Lambert, D., Skaro, V., Kovačevic, L., Turdikulova, S., Dalimova, D., Khusainova, R., Trofimova, N., Akhmetova, V., Khidiyatova, I., Lichman, D. V., Isakova, J., Pocheshkhova, E., Sabitov, Z., Barashkov, N. A., Nymadawa, P., Mihailov, E., Seng, J. W. T., Evseeva, I., Migliano, A. B., Abdullah, S., Andriadze, G., Primorac, D., Atramentova, L., Utevska, O., Yepiskoposyan, L., Marjanovic, D., Kushniarevich, A., Behar, D. M., Gilissen, C., Vissers, L., Veltman, J. A., Balanovska, E., Derenko, M., Malyarchuk, B., Metspalu, A., Fedorova, S., Eriksson, A., Manica, A., Mendez, F. L., Karafet, T. M., Veeramah, K. R., Bradman, N., Hammer, M. F., Osipova, L. P., Balanovsky, O., Khusnutdinova, E. K., Johnsen, K., Remm, M., Thomas, M. G., Tyler-Smith, C., Underhill, P. A., Willerslev, Eske, Nielsen, Rasmus, Metspalu, M., Villems, R. & Kivisild, T., 2015, In: Genome Research. 25, 4, p. 459-466 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. A scan for human-specific relaxation of negative selection reveals unexpected Polymorphism in Proteasome Genes

    Somel, M., Sayres, M. A. W., Jordan, G., Huerta-Sanchez, E., Fumagalli, M., Ferrer-Admetlla, A. & Nielsen, Rasmus, 2013, In: Molecular Biology and Evolution. 30, 8, p. 1808-1815 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    ANGSD: analysis of next generation sequencing data

    Korneliussen, Thorfinn Sand, Albrechtsen, Anders & Nielsen, Rasmus, 2014, In: B M C Bioinformatics. 15, 13 p., 356.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Adaptionism-30 years after Gould and Lewontin

    Nielsen, Rasmus, 2009, In: Evolution. 63, 10, p. 2487-90 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Adaptive evolution of cytochrome c oxidase: Infrastructure for a carnivorous plant radiation

    Jobson, R. W., Nielsen, Rasmus, Laakkonen, L., Wikström, M. & Albert, V. A., 2004, In: Proceedings of the National Academy of Sciences of the United States of America. 101, 52, p. 18064-18068 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Adaptive genic evolution in the Drosophila genomes

    Shapiro, J. A., Huang, W., Zhang, C., Hubisz, M. J., Lu, J., Turissini, D. A., Fang, S., Wang, H., Hudson, R. R., Nielsen, Rasmus, Chen, Z. & Wu, C., 2007, In: Proceedings of the National Academy of Science of the United States of America. 104, 7, p. 2271-6 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Altitude adaptation in Tibetans caused by introgression of Denisovan-like DNA

    Huerta-Sanchez, E., Jin, X., Asan, Bianba, Z., Peter, B. M., Vinckenbosch, N., Liang, Y., Yi, X., He, M., Somel, M., Ni, P., Wang, B., Ou, X., Huasang, Luosang, J., Cuo, Z. X. P., Li, K., Gao, G., Yin, Y., Wang, W. & 7 others, Zhang, X., Xu, X., Yang, H., Li, Y., Wang, J., Wang, J. & Nielsen, Rasmus, 2014, In: Nature. 512, 7513, p. 194-197 4 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  24. Published

    An Aboriginal Australian genome reveals separate human dispersals into Asia

    Rasmussen, M., Guo, X., Wang, Y., Lohmueller, K. E., Rasmussen, S., Albrechtsen, A., Skotte, L., Lindgreen, S., Metspalu, M., Jombart, T., Kivisild, T., Zhai, W., Eriksson, A., Manica, A., Orlando, L., De La Vega, F. M., Tridico, S., Metspalu, E., Nielsen, K., Avila Arcos, M. D. C. & 38 others, Moreno Mayar, J. Víctor, Muller, C., Dortch, J., Gilbert, M Thomas P, Lund, O., Wesolowska, A., Karmin, M., Weinert, L. A., Wang, B., Li, J., Tai, S., Xiao, F., Hanihara, T., van Driem, G., Jha, A. R., Ricaut, F., de Knijff, P., Migliano, A. B., Gallego Romero, I., Kristiansen, Karsten, Lambert, D. M., Brunak, Søren, Forster, P., Brinkmann, B., Nehlich, O., Bunce, M., Richards, M., Gupta, R., Bustamante, C. D., Krogh, Anders, Foley, R. A., Lahr, M. M., Balloux, F., Sicheritz-Pontén, T., Villems, R., Nielsen, Rasmus, Wang, J. & Willerslev, Eske, 2011, In: Science. 334, 6052, p. 94-98 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. An approximate full-likelihood method for inferring selection and allele frequency trajectories from DNA sequence data

    Stern, A. J., Wilton, P. R. & Nielsen, Rasmus, 2019, In: PLOS Genetics. 15, 9, 32 p., e1008384.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    An increase in [Ca2+]i activates basolateral chloride channels and inhibits apical sodium channels in frog skin epithelium

    Larsen, Birger Brodin, Rytved, K. A. & Nielsen, Rasmus, 1996, In: Pflügers Archiv - European Journal of Physiology. 433, 1-2, p. 16-25 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    An investigation of the statistical power of neutrality tests based on comparative and population genetic data

    Zhai, W., Nielsen, Rasmus & Slatkin, M., 2009, In: Molecular Biology and Evolution. 26, 2, p. 273-83 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    AncestralClust: clustering of divergent nucleotide sequences by ancestral sequence reconstruction using phylogenetic trees

    Pipes, L. & Nielsen, Rasmus, 2022, In: Bioinformatics. 38, 3, p. 663-670 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Ancient DNA reveals late survival of mammoth and horse in interior Alaska

    Haile, James Seymour, Froese, D. G., Macphee, R. D. E., Roberts, R. G., Arnold, L. J., Reyes, A. V., Rasmussen, M., Nielsen, Rasmus, Brook, B. W., Robinson, S., Demuro, M., Gilbert, M Thomas P, Munch, K., Austin, J. J., Cooper, A., Barnes, I., Möller, P. & Willerslev, Eske, 2009, In: Proceedings of the National Academy of Science of the United States of America. 106, 52, p. 22352-7 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Ancient Hybridization with an Unknown Population Facilitated High-Altitude Adaptation of Canids

    Wang, M., Wang, S., Li, Y., Jhala, Y., Thakur, M., Otecko, N. O., Si, J., Chen, H., Shapiro, B., Nielsen, Rasmus, Zhang, Y., Wu, D. & Parsch, J. (ed.), 2020, In: MOLECULAR BIOLOGY AND EVOLUTION . 37, 9, p. 2616-2629

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Ancient bacteria show evidence of DNA repair.

    Johnson, S. S., Hebsgaard, M. B., Christensen, T. R., Mastepanov, M., Nielsen, Rasmus, Munch, K., Brand, T., Gilbert, M Thomas P, Zuber, M. T., Bunce, M., Rønn, Regin, Gilichinsky, D., Froese, D. & Willerslev, Eske, 2007, In: Proceedings of the National Academy of Science of the United States of America. 104, 36, p. 14401-5 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Ancient biomolecules from deep ice cores reveal a forested southern Greenland.

    Willerslev, E., Cappellini, E., Boomsma, W. K., Nielsen, R., Hebsgaard, M. B., Brand, T. B., Hofreiter, M., Bunce, M., Poinar, H. N., Dahl-Jensen, D., Johnsen, S. J., Steffensen, J. P., Bennike, O., Schwenninger, J-L., Nathan, R., Armitage, S., de Hoog, C-J., Alfimov, V., Christl, M., Beer, J. & 10 others, Muscheler, R., Barker, J., Sharp, M., Penkman, K. E. H., Haile, J., Taberlet, P., Gilbert, M Thomas P, Casoli, A., Campani, E. & Collins, M. J., 2007, In: Science. 317, 5834, p. 111-114 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Ancient genomes show social and reproductive behavior of early Upper Paleolithic foragers

    Sikora, M., Seguin-Orlando, A., Sousa, V. C., Albrechtsen, A., Korneliussen, T. S., Ko, A., Rasmussen, S., Dupanloup, I., Nigst, P. R., Bosch, M. D., Renaud, G., Allentoft, M. E., Margaryan, A., Vasilyev, S. V., Veselovskaya, E. V., Borutskaya, S. B., Deviese, T., Comeskey, D., Higham, T., Manica, A. & 7 others, Foley, R., Meltzer, D. J., Nielsen, Rasmus, Excoffler, L., Lahr, M. M., Orlando, L. A. A. & Willerslev, Eske, 3 Nov 2017, In: Science. 358, 6363, p. 659-662 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Ancient human genome sequence of an extinct Palaeo-Eskimo

    Rasmussen, M., Li, Y., Lindgreen, S., Pedersen, J. S., Albrechtsen, A., Moltke, I., Metspalu, M., Metspalu, E., Kivisild, T., Gupta, R., Bertalan, M., Nielsen, K., Gilbert, T., Wang, Y., Raghavan, M., Campos, P., Kamp, H. L. M., Wilson, A. S., Gledhill, A., Tridico, S. & 32 others, Bunce, M., Lorenzen, Eline, Binladen, J. K. M. A., Guo, X., Zhao, J., Zhang, X., Zhang, H., Li, Z., Chen, M., Orlando, L. A. A., Kristiansen, Karsten, Bak, M., Tommerup, Niels, Bendixen, C., Pierre, T. L., Grønnow, B., Meldgaard, Morten, Andreasen, C., Fedorova, S. A., Osipova, L. P., Higham, T. F. G., Ramsey, C. B., Hansen, Thomas van Overeem, Nielsen, Finn Cilius, Crawford, M. H., Brunak, Søren, Sicheritz-Pontén, T., Villems, R., Nielsen, Rasmus, Krogh, Anders, Wang, J. & Willerslev, Eske, 11 Feb 2010, In: Nature. 463, 7282, p. 757-762 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Archaic adaptive introgression in TBX15/WARS2

    Racimo, Fernando, Gokhman, D., Fumagalli, M., Ko, A., Hansen, Torben, Moltke, Ida, Albrechtsen, Anders, Carmel, L., Huerta-Sánchez, E. & Nielsen, Rasmus, 2017, In: Molecular Biology and Evolution. 34, 3, p. 509-524 16 p., msw283.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Ascertainment bias in studies of human genome-wide polymorphism

    Clark, A. G., Hubisz, M. J., Bustamente, C. D., Williamson, S. H. & Nielsen, Rasmus, 2005, In: Genome Research. 15, 11, p. 1496-1502

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Assessing Uncertainty in the Rooting of the SARS-CoV-2 Phylogeny

    Pipes, L., Wang, H., Huelsenbeck, J. P. & Nielsen, Rasmus, 2021, In: Molecular Biology and Evolution. 38, 4, p. 1537-1543 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Assessing the evolutionary impact of amino acid mutations in the human genome

    Boyko, A. R., Williamson, S. H., Indap, A. R., Degenhardt, J. D., Hernandez, R. D., Lohmueller, K. E., Adams, M. D., Schmidt, S., Sninsky, J. J., Sunyaev, S. R., White, T. J., Nielsen, Rasmus, Clark, A. G. & Bustamante, C. D., 2008, In: PLoS Genetics. 4, 5, p. e1000083

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Association mapping for compound heterozygous traits using phenotypic distance and integer programming

    Gusfield, D. & Nielsen, Rasmus, 1 Jan 2015, Algorithms in Bioinformatics - 15th International Workshop, WABI 2015, Proceedings. Pop, M. & Touzet, H. (eds.). Springer Verlag, p. 136-147 12 p. A1. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 9289).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  40. Published

    Bacterial natural transformation by highly fragmented and damaged DNA

    Overballe-Petersen, S., Harms, K., Orlando, L. A. A., Moreno Mayar, J. Víctor, Rasmussen, Simon, Dahl, Tais Wittchen, Rosing, Minik Thorleif, Poole, A. M., Sicheritz-Ponten, T., Brunak, S., Inselmann, S., de Vries, J., Wackernagel, W., Pybus, O. G., Nielsen, Rasmus, Johnsen, P. J., Nielsen, K. M. & Willerslev, Eske, 3 Dec 2013, In: Proceedings of the National Academy of Sciences of the United States of America. 110, 49, p. 19860–19865 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Balancing Selection Maintains a Form of ERAP2 that Undergoes Nonsense-Mediated Decay and Affects Antigen Presentation

    Andrés, A. M., Dennis, M. Y., Kretzschmar, W. W., Cannons, J. L., Lee-Lin, S., Hurle, B., Schwartzberg, P. L., Williamson, S. H., Bustamante, C. D., Nielsen, Rasmus, Clark, A. G. & Green, E. D., 2010, In: PLOS Genetics. 6, 10, 13 p., e1001157.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Bayes Empirical Bayes Inference of Amino Acid Sites Under Positive Selection

    Yang, Z., Wong, W. S. W. & Nielsen, Rasmus, 2005, In: Molecular Biology and Evolution. 22, 4, p. 1107-1118

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Bayesian and maximum likelihood estimation of genetic maps

    York, T. L., Durrett, R. T., Tanksley, S. & Nielsen, Rasmus, 2005, In: Genetics Research. 85, 2, p. 159-168

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Bayesian estimation of the number of inversions in the history of two chromosomes

    York, T. L., Durrett, R. & Nielsen, Rasmus, 1 Dec 2002, In: Journal of Computational Biology. 9, 6, p. 805-818 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Bayesian inference of admixture graphs on Native American and Arctic populations

    Nielsen, S. V., Vaughn, Andrew Howland, Leppälä, K., Landis, M. J., Mailund, T. & Nielsen, Rasmus, 2023, In: PLOS Genetics. 19, 2, 22 p., e1010410.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Bottleneck and selection in the germline and maternal age influence transmission of mitochondrial DNA in human pedigrees

    Zaidi, A. A., Wilton, P. R., Su, M. S., Paul, I. M., Arbeithuber, B., Anthony, K., Nekrutenko, A., Nielsen, Rasmus & Makova, K. D., 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 50, p. 25172-25178 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    CCR5-Delta 32 is deleterious in the homozygous state in humans

    Wei, X. & Nielsen, Rasmus, Jun 2019, In: Nature Medicine. 25, 6, p. 909-910

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Calculation of Tajima's D and other neutrality test statistics from low depth next-generation sequencing data

    Korneliussen, Thorfinn Sand, Moltke, Ida, Albrechtsen, Anders & Nielsen, Rasmus, 2013, In: B M C Bioinformatics. 14, 14 p., 289.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Changes in ds/dn in the HIV-1 env Gene

    Nielsen, Rasmus, 1999, In: MOLECULAR BIOLOGY AND EVOLUTION . 16, 5, p. 711-714 4 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  50. Published

    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments

    Wang, Y., van der Hoeven, R. S., Nielsen, Rasmus, Mueller, L. A. & Tanksley, S. D., 2005, In: Theoretical and Applied Genetics. 112, 1, p. 72-84

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Classic Selective Sweeps Revealed by Massive Sequencing in Cattle

    Qanbari, S., Pausch, H., Jansen, S., Somel, M., Strom, T. M., Fries, R., Nielsen, Rasmus & Simianer, H., 2014, In: PLOS Genetics. 10, 2, 13 p., e1004148.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    Comparative genome sequencing of Drosophila pseudoobscura: Chromosomal, gene, and cis-element evolution

    Richards, S., Liu, Y., Bettencourt, B. R., Hradecky, P., Letovsky, S., Nielsen, Rasmus & et al., 2005, In: Genome Research. 15, 1, p. 1-18

    Research output: Contribution to journal › Journal article › Research › peer-review

  53. Published

    Comparative genomics: Difference of expression

    Nielsen, Rasmus, 2006, In: Nature. 440, 7081, p. 161-161

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. Published

    Complete resequencing of 40 genomes reveals domestication events and genes in silkworm (Bombyx)

    Xia, Q., Guo, Y., Zhang, Z., Li, D., Xuan, Z., Li, Z., Dai, F., Li, Y., Cheng, D., Li, R., Cheng, T., Jiang, T., Becquet, C., Xu, X., Liu, C., Zha, X., Fan, W., Lin, Y., Shen, Y., Jiang, L. & 38 others, Jensen, J., Hellmann, I., Tang, S., Zhao, P., Xu, H., Yu, C., Zhang, G., Li, J., Cao, J., Liu, S., He, N., Zhou, Y., Liu, H., Zhao, J., Ye, C., Du, Z., Pan, G., Zhao, A., Shao, H., Zeng, W., Wu, P., Li, C., Pan, M., Li, J., Yin, X., Li, D., Wang, J., Zheng, H., Wang, W., Zhang, X., Li, S., Yang, H., Lu, C., Nielsen, Rasmus, Zhou, Z., Wang, J., Xiang, Z. & Wang, J., 2009, In: Science. 326, 5951, p. 433-6 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  55. Published

    Composite likelihood method for inferring local pedigrees

    Ko, A. & Nielsen, Rasmus, 21 Aug 2017, In: PLoS Genetics. 13, 8, 21 p., e1006963.

    Research output: Contribution to journal › Journal article › Research › peer-review

  56. Published

    Convergent evolution of increased urine-concentrating ability in desert mammals

    Rocha, J. L., Brito, J. C., Nielsen, Rasmus & Godinho, R., 2021, In: Mammal Review. 51, 4, p. 482-491 10 p.

    Research output: Contribution to journal › Review › Research › peer-review

  57. Published

    Correcting estimators of theta and Tajima's D for ascertainment biases caused by the single-nucleotide polymorphism discovery process

    Ramírez-Soriano, A. & Nielsen, Rasmus, 2009, In: Genetics. 181, 2, p. 701-10 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  58. Correcting for ascertainment biases when analyzing SNP data: applications to the estimation of linkage disequilibrium

    Nielsen, Rasmus & Signorovitch, J., 2003, In: Theoretical Population Biology. 63, 3, p. 245-255 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  59. Costs and benefits of mutational robustness in RNA viruses

    Stern, A., Bianco, S., Yeh, M. T., Wright, C., Butcher, K., Tang, C., Nielsen, Rasmus & Andino, R., 2014, In: Cell Reports. 8, 4, p. 1026-1036 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  60. Published

    Covariance of pairwise differences on a multi-species coalescent tree and implications for FST

    Guerra, G. & Nielsen, Rasmus, 2022, In: Philosophical Transactions of the Royal Society B: Biological Sciences. 377, 1852, 14 p., 20200415.

    Research output: Contribution to journal › Journal article › Research › peer-review

  61. Published

    CpG + CpNpG Analysis of Protein-Coding Sequences from Tomato

    Hobolth, A., Nielsen, Rasmus, Wang, Y., Wu, F. & Tanksley, S. D., 2006, In: Molecular Biology and Evolution. 23, 6, p. 1318-1323

    Research output: Contribution to journal › Journal article › Research › peer-review

  62. Published

    Darwinian and demographic forces affecting human protein coding genes.

    Nielsen, Rasmus, Hubisz, M. J., Hellmann, I., Torgerson, D., Andres, A. M., Albrechtsen, Anders, Gutenkunst, R., Adams, M. D., Cargill, M., Boyko, A., Indap, A., Bustamante, C. D. & Clark, A. G., 2009, In: Genome Research. 19, 5, p. 838-49 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  63. Published

    Demographic histories and patterns of linkage disequilibrium in Chinese and Indian rhesus macaques

    Hernandez, R. D., Hubisz, M. J., Wheeler, D. A., Smith, D. G., Ferguson, B., Rogers, J., Nazareth, L., Indap, A., Bourquin, T., McPherson, J., Muzny, D., Gibbs, R., Nielsen, Rasmus & Bustamante, C. D., 2007, In: Science. 316, 5822, p. 240-3 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  64. Published

    Dependence of paracentric inversion rate on tract length

    York, T. L., Durrett, R. & Nielsen, Rasmus, 2007, In: BMC Bioinformatics. 8, p. 115

    Research output: Contribution to journal › Journal article › Research › peer-review

  65. Published

    Design of association studies with pooled or un-pooled next-generation sequencing data

    Kim, S. Y., Li, Y., Guo, Y., Li, R., Holmkvist, J., Hansen, Torben, Pedersen, Oluf Borbye, Wang, J. & Nielsen, Rasmus, 2010, In: Genetic Epidemiology. 34, 5, p. 479-491 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  66. Published

    Detecting Selection in Multiple Populations by Modeling Ancestral Admixture Components

    Cheng, J. Y., Stern, A. J., Racimo, Fernando & Nielsen, Rasmus, 2022, In: Molecular Biology and Evolution. 39, 1, 14 p., msab294.

    Research output: Contribution to journal › Journal article › Research › peer-review

  67. Published

    Detecting Site-Specific Physicochemical Selective Pressures: Applications to the Class I HLA of the Human Major Histocompatibility Complex and the SRK of the Plant Sporophytic Self-Incompatibility System

    Sainudiin, R., Wong, W. S. W., Yogeeswaran, K., Nasrallah, J. B., Yang, Z. & Nielsen, Rasmus, 2005, In: Journal of Molecular Evolution. 60, 3, p. 315-326

    Research output: Contribution to journal › Journal article › Research › peer-review

  68. Detecting adaptive trait loci in nonmodel systems: divergence or admixture mapping?

    Crawford, J. E. & Nielsen, Rasmus, 2013, In: Molecular Ecology. 22, 24, p. 6131-6148 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  69. Published

    Detecting coevolving amino acid sites using Bayesian mutational mapping

    Dimmic, M. W., Hubisz, M. J., Bustamente, C. D. & Nielsen, Rasmus, 2005, In: Bioinformatics. 21, 1, p. i126-i135

    Research output: Contribution to journal › Journal article › Research › peer-review

  70. Detecting recent selective sweeps while controlling for mutation rate and background selection

    Huber, C. D., DeGiorgio, M., Hellmann, I. & Nielsen, Rasmus, 2016, In: Molecular Ecology. 25, 1, p. 142-156 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  71. Published

    Detecting selection needs comparative data

    Nielsen, Rasmus & Hubisz, M. J., 2005, In: Nature. 433, 7023, p. E6

    Research output: Contribution to journal › Journal article › Research › peer-review

  72. Published

    Disclosure of variation

    Nielsen, Rasmus, 2005, In: Nature. 434, 7031, p. 288-289

    Research output: Contribution to journal › Journal article › Research › peer-review

  73. Disentangling selection on genetically correlated polygenic traits via whole-genome genealogies

    Stern, A. J., Speidel, L., Zaitlen, N. A. & Nielsen, Rasmus, 2021, In: American Journal of Human Genetics. 108, 2, p. 219-239 21 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  74. Published

    DistAngsd: Fast and Accurate Inference of Genetic Distances for Next-Generation Sequencing Data

    Zhao, Lei, Nielsen, Rasmus & Korneliussen, Thorfinn Sand, 2022, In: Molecular Biology and Evolution. 39, 6, 14 p., msac119.

    Research output: Contribution to journal › Journal article › Research › peer-review

  75. Distinguishing Migration From Isolation: A Markov Chain Monte Carlo Approach

    Nielsen, Rasmus & Wakeley, J., 2001, In: Genetics. 158, 2, p. 885-896 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  76. Distinguishing between Selective Sweeps from Standing Variation and from a De Novo Mutation

    Peter, B. M., Huerta-Sanchez, E. & Nielsen, Rasmus, 2012, In: P L o S Genetics (Online). 8, 10, p. 1-14 14 p., e1003011.

    Research output: Contribution to journal › Journal article › Research › peer-review

  77. Published

    Divergence, gene flow, and the origin of leapfrog geographic distributions: The history of colour pattern variation in Phyllobates poison-dart frogs

    Márquez, R., Linderoth, T. P., Mejia-Vargas, D., Nielsen, Rasmus, Amezquita, A. & Kronforst, M. R., 2020, In: Molecular Ecology. 29, 19, p. 3702-3719 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  78. Published

    Early human dispersals within the Americas

    Moreno-Mayar, J. V., Vinner, L., de Barros Damgaard, P., de la Fuente, C., Allentoft, M. E., Vimala, T., Racimo, F., Rasmussen, S., Margaryan, A., Iraeta Orbegozo, M., Mylopotamitaki, D., Alexandersen, V., Primeau, C., Gregersen, K., Hansen, K. L., Lynnerup, N., Kjær, K., Schroeder, H., Malaspinas, A. S., Sikora, M. & 2 others, Nielsen, Rasmus & Willerslev, Eske, 7 Dec 2018, In: Science (New York, N.Y.). 362, 6419, p. 1, 1-11 12 p., eaav2621.

    Research output: Contribution to journal › Journal article › Research › peer-review

  79. Effect of nonindependent substitution on phylogenetic accuracy

    Huelsenbeck, J. P. & Nielsen, Rasmus, 1999, In: Systematic Biology. 48, 2, p. 317-328 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  80. Published

    Elevated genetic risk for multiple sclerosis emerged in steppe pastoralist populations

    Barrie, W., Yang, Y., Irving-Pease, E. K., Attfield, K. E., Scorrano, G., Jensen, L. T., Armen, A. P., Dimopoulos, E. A., Stern, A., Refoyo-Martinez, A., Pearson, A., Ramsøe, A., Gaunitz, C., Demeter, F., Jørkov, M. L. S., Møller, S. B., Springborg, B., Klassen, L., Hyldgård, I. M., Wickmann, N. & 11 others, Vinner, Lasse, Korneliussen, Thorfinn Sand, Allentoft, Morten Erik, Sikora, Martin, Kristiansen, Kristian, Rodriguez, S., Nielsen, Rasmus, Iversen, A. K. N., Lawson, D. J., Fugger, Lars & Willerslev, Eske, 2024, In: Nature. 625, 7994, p. 321-328

    Research output: Contribution to journal › Journal article › Research › peer-review

  81. Published

    Emergence and Spread of Basal Lineages of Yersinia pestis during the Neolithic Decline

    Rascovan, N., Sjogren, K., Kristiansen, K., Nielsen, Rasmus, Willerslev, Eske, Desnues, C. & Rasmussen, Simon, 2019, In: Cell. 176, 1-2, p. 295-305.e10

    Research output: Contribution to journal › Journal article › Research › peer-review

  82. Published

    Error-prone polymerase activity causes multinucleotide mutations in humans

    Harris, K. & Nielsen, Rasmus, 1 Sep 2014, In: Genome Research. 24, 9, p. 1445-1454 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  83. Published

    Estimating IBD tracts from low coverage NGS data

    Vieira, Filipe Garrett, Albrechtsen, Anders & Nielsen, Rasmus, 2016, In: Bioinformatics. 32, 14, p. 2096-2102 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  84. Published

    Estimating inbreeding coefficients from NGS data: impact on genotype calling and allele frequency estimation

    Vieira, Filipe Garrett, Fumagalli, M., Albrechtsen, Anders & Nielsen, Rasmus, 2013, In: Genome Research. 23, p. 1852-1861 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  85. Estimating population divergence time and phylogeny from single-nucleotide polymorphisms data with outgroup ascertainment bias

    Wang, Y. & Nielsen, Rasmus, 2012, In: Molecular Ecology. 21, 4, p. 974-986 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  86. Published

    Estimating the relative proportions of SARS-CoV-2 haplotypes from wastewater samples

    Pipes, L., Chen, Z., Afanaseva, S. & Nielsen, Rasmus, 2022, In: Cell Reports Methods. 2, 10, 100313.

    Research output: Contribution to journal › Journal article › Research › peer-review

  87. Published

    Estimating the timing of multiple admixture events using 3-locus linkage disequilibrium

    Liang, M., Shishkin, M., Mikhailova, A., Shchur, V. & Nielsen, Rasmus, 2022, In: PLOS Genetics. 18, 7, 17 p., e1010281.

    Research output: Contribution to journal › Journal article › Research › peer-review

  88. Published

    Estimating the timing of multiple admixture pulses during local ancestry inference

    Medina, P., Thornlow, B., Nielsen, Rasmus & Corbett-Detig, R., 2018, In: Genetics. 210, 3, p. 1089-1107 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  89. Published

    Estimation of 2N(e)s from temporal allele frequency data

    Bollback, J. P., York, T. L. & Nielsen, Rasmus, 2008, In: Genetics. 179, p. 497-502 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  90. Published

    Estimation of allele frequency and association mapping using next-generation sequencing data

    Kim, S. Y., Lohmueller, K. E., Albrechtsen, Anders, Li, Y., Korneliussen, Thorfinn Sand, Tian, G., Grarup, Niels, Jiang, T., Andersen, G., Witte, D., Jorgensen, T., Hansen, Torben, Pedersen, Oluf Borbye, Wang, J. & Nielsen, Rasmus, 2011, In: B M C Bioinformatics. 12, p. 231 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  91. Published

    Evaluation of an Improved Branch-Site Likelihood Method for Detecting Positive Selection at the Molecular Level

    Zhang, J., Nielsen, Rasmus & Yang, Z., 2005, In: Molecular Biology and Evolution. 22, 12, p. 2472-2479

    Research output: Contribution to journal › Journal article › Research › peer-review

  92. Published

    Evaluation of methods for estimating coalescence times using ancestral recombination graphs

    Y C Brandt, D., Wei, X., Deng, Y., Vaughn, A. H. & Nielsen, Rasmus, 2022, In: Genetics. 221, 1, 13 p., iyac044.

    Research output: Contribution to journal › Journal article › Research › peer-review

  93. Evidence for Positive Selection on a Number of MicroRNA Regulatory Interactions during Recent Human Evolution

    Li, J., Liu, Y., Xin, X., Kim, T. S., Cabeza, E. A., Ren, J., Nielsen, Rasmus, Wrana, J. L. & Zhang, Z., 1 Mar 2012, In: P L o S Genetics (Online). 8, 3

    Research output: Contribution to journal › Journal article › Research › peer-review

  94. Published

    Evidence for a Na+/Ca2+ exchange mechanism in frog skin epithelium

    Madsen, K. H., Larsen, Birger Brodin & Nielsen, Rasmus, 1999, In: Pflügers Archiv - European Journal of Physiology. 437, 2, p. 175-81 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  95. Evidence for archaic adaptive introgression in humans

    Racimo, Fernando, Sankararaman, S., Nielsen, Rasmus & Huerta-Sánchez, E., 18 May 2015, In: Nature Reviews Genetics. 16, 6, p. 359-371 13 p.

    Research output: Contribution to journal › Review › Research › peer-review

  96. Evolution of GOUNDRY, a cryptic subgroup of Anopheles gambiae s.l., and its impact on susceptibility to Plasmodium infection

    Crawford, J. E., Riehle, M. M., Markianos, K., Bischoff, E., Guelbeogo, W. M., Gneme, A., Sagnon, N., Vernick, K. D., Nielsen, Rasmus & Lazzaro, B. P., 2016, In: Molecular Ecology. 25, 7, p. 1494-1510 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  97. Published

    Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium

    Clark, A. G., Eisen, M. B., Smith, D. R., Bergman, C. M., Oliver, B., Markow, T. A., Kaufman, T. C., Kellis, M., Gelbart, W., Iyer, V. N., Pollard, D. A., Sackton, T. B., Larracuente, A. M., Singh, N. D., Abad, J. P., Abt, D. N., Adryan, B., Aguade, M., Akashi, H., Anderson, W. W. & 31 others, Aquadro, C. F., Ardell, D. H., Arguello, R., Artieri, C. G., Barbash, D. A., Barker, D., Barsanti, P., Batterham, P., Batzoglou, S., Begun, D., Bhutkar, A., Blanco, E., Bosak, S. A., Bradley, R. K., Brand, A. D., Brent, M. R., Brooks, A. N., Brown, R. H., Butlin, R. K., Caggese, C., Calvi, B. R., Bernardo de Carvalho, A., Caspi, A., Castrezana, S., Celniker, S. E., Chang, J. L., Garcia, A. C. L., Nielsen, Rasmus, Pedersen, J. S., Vieira, Filipe Garrett & Drosophila 12 Genomes Consortium, D. 1. G. C., 2007, In: Nature. 450, 7167, p. 203-18 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  98. Published

    Evolutionary and biomedical insights from the rhesus macaque genome

    Gibbs, R. A., Rogers, J., Katze, M. G., Bumgarner, R., Weinstock, G. M., Mardis, E. R., Remington, K. A., Strausberg, R. L., Venter, J. C., Wilson, R. K., Batzer, M. A., Bustamante, C. D., Eichler, E. E., Hahn, M. W., Hardison, R. C., Makova, K. D., Miller, W., Milosavljevic, A., Palermo, R. E., Siepel, A. & 31 others, Sikela, J. M., Attaway, T., Bell, S., Bernard, K. E., Buhay, C. J., Chandrabose, M. N., Dao, M., Davis, C., Delehaunty, K. D., Ding, Y., Dinh, H. H., Dugan-Rocha, S., Fulton, L. A., Gabisi, R. A., Garner, T. T., Godfrey, J., Hawes, A. C., Hernandez, J., Hines, S., Holder, M., Hume, J., Jhangiani, S. N., Joshi, V., Khan, Z. M., Kirkness, E. F., Cree, A., Fowler, R. G., Lee, S., Lewis, L. R., Nielsen, Rasmus & Rhesus Macaque Genome Sequencing and Analysis Consortium, R. M. G. S. A. A. C., 2007, In: Science. 316, 5822, p. 222-34 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  99. Published

    Exome sequencing-driven discovery of coding polymorphisms associated with common metabolic phenotypes

    Albrechtsen, A., Grarup, N., Li, Y., Sparsø, T. H., Tian, G., Cao, H., Jiang, T., Kim, S. Y., Korneliussen, T. S., Li, Q., Nie, C., Wu, R., Skotte, L., Morris, A. P., Ladenvall, C., Cauchi, S., Stancáková, A., Andersen, G., Astrup, A., Banasik, K. & 86 others, Bennett, A. J., Bolund, L., Charpentier, G., Chen, Y., Dekker, J. M., Doney, A. S. F., Dorkhan, M., Forsen, T., Frayling, T. M., Groves, C. J., Gui, Y., Hallmans, G., Hattersley, A. T., He, K., Hitman, G. A., Holmkvist, J., Huang, S., Jiang, H., Jin, X., Justesen, Johanne Marie, Kristiansen, Karsten, Kuusisto, J., Lajer, M., Lantieri, O., Li, W., Liang, H., Liao, Q., Liu, X., Ma, T., Ma, X., Manijak, M. P., Marre, M., Mokrosinski, J., Morris, A. D., Mu, B., Nielsen, A. A., Nijpels, G., Nilsson, P., Palmer, C. N. A., Rayner, N. W., Renström, F., Ribel-Madsen, R., Robertson, N., Rolandsson, O., Rossing, P., Schwartz, Thue W., Slagboom, P. E., Sterner, M., Tang, M., Tarnow, L., Tuomi, T., Van't Riet, E., van Leeuwen, N., V Varga, Tibor, Vestmar, M. A., Walker, M., Wang, B., Wang, Y., Wu, H., Xi, F., Yengo, L., Yu, C., Zhang, X., Zhang, J., Zhang, Q., Zhang, W., Zheng, H., Zhou, Y., Altshuler, D., 't Hart, L. M., Franks, P. W., Balkau, B., Froguel, P., McCarthy, M. I., Laakso, M., Groop, L., Christensen, C., Brandslund, I., Lauritzen, T., Witte, D. R., Linneberg, A., Jørgensen, T., Hansen, Torben, Wang, J., Nielsen, Rasmus & Pedersen, Oluf Borbye, 2013, In: Diabetologia. 56, 2, p. 298-310 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  100. Published

    Exploring variation in the d(N)/d(S) ratio among sites and lineages using mutational mappings: applications to the influenza virus

    Zhai, W., Slatkin, M. & Nielsen, Rasmus, 2007, In: Journal of Molecular Evolution. 65, 3, p. 340-8 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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