Rute Andreia Rodrigues da Fonseca

Rute Andreia Rodrigues da Fonseca

Associate Professor

ORCID: 0000-0002-2805-4698

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  1. Published

    Comparative analysis of complete mitochondrial genomes suggests that relaxed purifying selection is driving high nonsynonymous evolutionary rate of the NADH2 gene in whitefish (Coregonus ssp.)

    Jacobsen, M. W., Rodrigues da Fonseca, Rute Andreia, Bernatchez, L. & Hansen, M. M., 2016, In: Molecular Phylogenetics and Evolution. 95, p. 161-170 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Combined transcriptomic and proteomic analysis of the posterior salivary gland from the southern blue-ringed octopus and the southern sand octopus

    Whitelaw, B. L., Strugnell, J. M., Faou, P., Rodrigues da Fonseca, Rute Andreia, Hall, N. E., Norman, M., Finn, J. & Cooke, I. R., 2016, In: Journal of Proteome Research. 15, 9, p. 3284-3297 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Cephalopods in neuroscience: regulations, research and the 3Rs

    Fiorito, G., Affuso, A., Anderson, D. B., Basil, J., Bonnaud, L., Botta, G., Cole, A., D'Angelo, L., De Girolamo, P., Dennison, N., Dickel, L., Di Cosmo, A., Di Cristo, C., Gestal, C., Rodrigues da Fonseca, R. A., Grasso, F., Kristiansen, T., Kuba, M., Maffucci, F., Manciocco, A. & 15 others, Mark, F. C., Melillo, D., Osorio, D., Palumbo, A., Perkins, K., Ponte, G., Raspa, M., Shashar, N., Smith, J., Smith, D., Sykes, A., Villanueva, R., Tublitz, N., Zullo, L. & Andrews, P., 2014, In: Invertebrate Neuroscience. 14, 1, p. 13-36 24 p.

    Research output: Contribution to journal › Review › Research › peer-review

  4. Published

    Cephalopod genomics: a plan of strategies and organization

    Albertin, C. B., Bonnaud, L., Brown, C. T., Crookes-Goodson, W. J., Rodrigues da Fonseca, R. A., Di Cristo, C., Dilkes, B. P., Edsinger-Gonzales, E., Freeman, Jr., R. M., Hanlon, R. T., Koenig, K. M., Lindgren, A. R., Martindale, M. Q., Minx, P., Moroz, L. L., Nödl, M-T., Nyholm, S. V., Ogura, A., Pungor, J. R., Rosenthal, J. J. C. & 6 others, Schwarz, E. M., Shigeno, S., Strugnell, J. M., Wollesen, T., Zhang, G. & Ragsdale, C. W., 2012, In: Standards in Genomic Sciences. 7, p. 175-188 14 p., 1.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Cartilaginous fishes offer unique insights into the evolution of the nuclear receptor gene repertoire in gnathostomes

    Fonseca, E., Machado, A. M., Vilas-Arrondo, N., Gomes-dos-Santos, A., Verissimo, A., Esteves, P., Almeida, T., Themudo, G., Ruivo, R., Perez, M., Rodrigues da Fonseca, Rute Andreia, Santos, M. M., Froufe, E., Roman-Marcote, E., Venkatesh, B. & Castro, L. F. C., 2020, In: General and Comparative Endocrinology. 295, 10 p., 113527.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Ancient genomics

    Der Sarkissian, C., Allentoft, M. E., Avila Arcos, M. D. C., Barnett, R., Campos, P. F., Cappellini, E., Ermini, L., Fernandez Garcia, R., Rodrigues da Fonseca, R. A., Ginolhac, A., Hansen, A. J., Jónsson, H., Korneliussen, T. S., Margaryan, A., Martin, M. D., Moreno Mayar, J. V., Raghavan, M., Rasmussen, M., Sandoval Velasco, M., Schroeder, H. & 6 others, Schubert, Mikkel, Seguin-Orlando, A., Wales, N., Gilbert, M Thomas P, Willerslev, Eske & Orlando, L. A. A., 2015, In: Philosophical Transactions of the Royal Society B: Biological Sciences. 370, 1660, 12 p., 20130387.

    Research output: Contribution to journal › Review › Research › peer-review

  7. Published

    Adaptive venom evolution and toxicity in octopods is driven by extensive novel gene formation, expansion, and loss

    Whitelaw, B. L., Cooke, I. R., Finn, J., Rodrigues da Fonseca, Rute Andreia, Ritschard, E. A., Gilbert, M Thomas P, Simakov, O. & Strugnell, J. M., 2020, In: GigaScience. 9, 11, 15 p., giaa120.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    A resource for sustainable management: De novo assembly and annotation of the liver transcriptome of the Atlantic chub mackerel, Scomber colias

    Machado, A. M., Felício, M., Fonseca, E., Rodrigues da Fonseca, Rute Andreia & Castro, L. F. C., 2018, In: Data in Brief. 18, p. 276-284 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    A refined model of the genomic basis for phenotypic variation in vertebrate hemostasis

    Ribeiro, Â. M., Zepeda Mendoza, M. L., Bertelsen, Mads Frost, Kristensen, Annemarie T., Jarvis, E. D., Gilbert, M Thomas P & Rodrigues da Fonseca, Rute Andreia, 2015, In: B M C Evolutionary Biology. 15, 8 p., 124.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    A draft genome sequence of the elusive giant squid, Architeuthis dux

    da Fonseca, R. R., Couto, A., Machado, A. M., Brejova, B., Albertin, C. B., Silva, F., Gardner, P., Baril, T., Hayward, A., Campos, A., Ribeiro, Â. M., Barrio-Hernandez, I., Hoving, H-J., Tafur-Jimenez, R., Chu, C., Frazão, B., Petersen, B., Peñaloza, F., Musacchia, F., Alexander, G. C. & 24 others, Osório, H., Winkelmann, I., Simakov, O., Rasmussen, Simon, Rahman, M. Z., Pisani, D., Vinther, J., Jarvis, E., KU, thw266, Strugnell, J. M., Castro, L. F. C., Fedrigo, O., Patricio, M., Li, Q., Rocha, S., Antunes, A., Wu, Y., Ma, B., Sanges, R., Vinar, T., Blagoev, B., Sicheritz-Pontén, Thomas, Nielsen, Rasmus & Gilbert, M Thomas P, 2020, In: GigaScience. 9, 1, 12 p., giz152.

    Research output: Contribution to journal › Journal article › Research › peer-review

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ID: 33270633