Shyam Gopalakrishnan
Associate Professor
- 2016
- Published
An Anthropocene map of genetic diversity
Miraldo, A., Li, Sen, Borregaard, Michael Krabbe, Florez Rodriguez, A., Gopalakrishnan, Shyam, Rizvanovic, M., Wang, Z., Rahbek, Carsten, Marske, K. A. & Nogues, David Bravo, 2016, In: Science. 353, 6307, p. 1532-1535 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome sequence of a 5,310-year-old maize cob provides insights into the early stages of maize domestication
Ramos Madrigal, Jazmin, Smith, B. D., Moreno Mayar, J. Víctor, Gopalakrishnan, Shyam, Ross-Ibarra, J., Gilbert, M Thomas P & Wales, N., 2016, In: Current Biology. 26, 23, p. 3195-3201 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome-wide association study of behavioral, physiological and gene expression traits in outbred CFW mice
Parker, C. C., Gopalakrishnan, Shyam, Carbonetto, P., Gonzales, N. M., Leung, E., Park, Y. J., Aryee, E., Davis, J., Blizard, D. A., Ackert-Bicknell, C. L., Lionikas, A., Pritchard, J. K. & Palmer, A. A., Aug 2016, In: Nature Genetics. 48, 8, p. 919-926 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2017
- Published
The wolf reference genome sequence (Canis lupus lupus) and its implications for Canis spp. population genomics
Gopalakrishnan, Shyam, Samaniego Castruita, J. A., Sinding, Mikkel Holger Strander, Kuderna, L. F. K., Räikkönen, J., Petersen, Bent, Sicheritz-Pontén, T., Larson, G., Orlando, L. A. A., Marques-Bonet, T., Hansen, Anders Johannes, Dalén, L. & Gilbert, M Thomas P, 2017, In: BMC Genomics. 18, 11 p., 495.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing
Mak, Sarah Siu Tze, Gopalakrishnan, Shyam, Carøe, C., Geng, C., Liu, Shanlin, Sinding, Mikkel Holger Strander, Kuderna, L. F. K., Zhang, W., Fu, S., Vieira, Filipe Garrett, Germonpré, M., Bocherens, H., Fedorov, S., Petersen, Bent, Sicheritz-Pontén, T., Marques-Bonet, T., KU, thw266, Jiang, H. & Gilbert, M Thomas P, Aug 2017, In: GigaScience. 6, 8, p. 1–13 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2018
- Published
Agriculture shapes the trophic niche of a bat preying on multiple pest arthropods across Europe: Evidence from DNA metabarcoding
Aizpurua Arrieta, Ostaizka, Budinski, I., Georgiakakis, P., Gopalakrishnan, Shyam, Ibanez, C., Mata, V., Rebelo, H., Russo, D., Szodoray-Paradi, F., Zhelyazkova, V., Zrncic, V., Gilbert, M Thomas P & Alberdi, Antton, 2018, In: Molecular Ecology. 27, 3, p. 815-825 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Ancient genomes from Iceland reveal the making of a human population
Ebenesersdóttir, S. S., Sandoval Velasco, M., Gunnarsdóttir, E. D., Jagadeesan, A., Guðmundsdóttir, V. B., Thordardóttir, E. L., Einarsdóttir, M. S., Moore, K. H. S., Sigurðsson, Á., Magnusdóttir, D. N., Jonsson, H., Snorradóttir, S., Hovig, E., Møller, P., Kockum, I., Olsson, T., Alfredsson, L., Hansen, T. F., Werge, T., Cavalleri, G. L. & 10 others, , 2018, In: Science. 360, 6392, p. 1028-1032 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Interspecific Gene Flow Shaped the Evolution of the Genus Canis
Gopalakrishnan, S., Sinding, M. H. S., Ramos-Madrigal, J., Niemann, J., Samaniego Castruita, J. A., Vieira, F. G., Carøe, C., Montero, M. D. M., Kuderna, L., Serres, A., González-Basallote, V. M., Liu, Y. H., Wang, G. D., Marques-Bonet, T., Mirarab, S., Fernandes, C., Gaubert, P., Koepfli, K. P., Budd, J., Rueness, E. K. & 7 others, , 2018, In: Current Biology. 28, 21, p. 3441-3449Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Origins and genetic legacies of the Caribbean Taino
Schroeder, H., Sikora, M., Gopalakrishnan, S., Cassidy, L. M., Delserc, P. M., Velasco, M. S., Schraiber, J. G., Rasmussen, S., Homburger, J. R., Avila-Arcos, M. C., Allentoft, M. E., Moreno Mayar, J. V., Renaud, G., Gomez-Carballa, A., Laffoon, J. E., Hopkins, R. J. A., Higham, T. F. G., Carr, R. S., Schaffer, W. C., Day, J. S. & 7 others, , 2018, In: Proceedings of the National Academy of Sciences of the United States of America. 115, 10, p. 2341-2346 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Single-tube library preparation for degraded DNA
Carøe, C., Gopalakrishnan, Shyam, Vinner, Lasse, Mak, Sarah Siu Tze, Sinding, Mikkel Holger Strander, Samaniego, J. A., Wales, N., Sicheritz-Ponten, T. & Gilbert, M Thomas P, 2018, In: Methods in Ecology and Evolution. 9, 2, p. 410-419 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The evolutionary history of dogs in the Americas
Leathlobhair, M. N., Perri, A. R., Irving-Pease, E. K., Witt, K. E., Linderholm, A., Haile, J., Lebrasseur, O., Ameen, C., Blick, J., Boyko, A. R., Brace, S., Cortes, Y. N., Crockford, S. J., Devault, A., Dimopoulos, E. A., Eldridge, M., Enk, J., Gopalakrishnan, S., Gori, K., Grimes, V. & 30 others, , 2018, In: Science. 361, 6397, p. 81-85 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Using DNA metabarcoding for simultaneous inference of common vampire bat diet and population structure
Bohmann, Kristine, Gopalakrishnan, Shyam, Nielsen, M., Santos-Bay, Luisa, Jones, G., Streicker, D. G. & Gilbert, M Thomas P, 2018, In: Molecular Ecology Resources. 18, 5, p. 1050-1063 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Whole-Genome Sequencing of African Dogs Provides Insights into Adaptations against Tropical Parasites
Liu, Y., Wang, L., Xu, T., Guo, X., Li, Y., Yin, T., Yang, H., Hu, Y., Adeola, A. C., Sanke, O. J., Otecko, N. O., Wang, M., Ma, Y., Charles, O. S., Sinding, M. S., Gopalakrishnan, S., Alfredo Samaniego, J., Hansen, A. J., Fernandes, C., Gaubert, P. & 10 others, , 1 Feb 2018, In: MOLECULAR BIOLOGY AND EVOLUTION . 35, 2, p. 287-298Research output: Contribution to journal › Letter › Research › peer-review
- 2019
- Published
A 5700 year-old human genome and oral microbiome from chewed birch pitch
Jensen, T. Z. T., Niemann, J., Iversen, K. H., Fotakis, A. K., Gopalakrishnan, S., Vågene, Å. J., Pedersen, M. W., Sinding, M-H. S., Ellegaard, M. R., Allentoft, M. E., Lanigan, L. T., Taurozzi, A. J., Nielsen, S. H., Dee, M. W., Mortensen, M. N., Christensen, M. C., Sørensen, S. A., Collins, M. J., Gilbert, M. T. P., Sikora, M. & 2 others, , 2019, In: Nature Communications. 10, 10 p., 5520.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
- Published
Hybridization between two high Arctic cetaceans confirmed by genomic analysis
Skovrind, Mikkel, Castruita, J. A. S., Haile, James Seymour, Treadaway, E. C., Gopalakrishnan, Shyam, Westbury, M. V., Heide-Jorgensen, M. P., Szpak, P. & Lorenzen, Eline, 2019, In: Scientific Reports. 9, 10 p., 7729.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Specialized sledge dogs accompanied Inuit dispersal across the North American Arctic
Ameen, C., Feuerborn, T. R., Brown, S. K., Linderholm, A., Hulme-Beaman, A., Lebrasseur, O., Sinding, M-H. S., Lounsberry, Z. T., Lin, A. T., Appelt, M., Bachmann, L., Betts, M., Britton, K., Darwent, J., Dietz, R., Fredholm, M., Gopalakrishnan, S., Goriunova, O. I., Grønnow, B., Haile, J. & 39 others, , 2019, In: Proceedings. Biological sciences. 286, 1916, p. 20191929Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The genetic origins of Saint Helena’s liberated Africans
Sandoval-Velasco, Marcela, Jagadeesan, A., Ávila-Arcos, M. C., Gopalakrishnan, Shyam, Ramos Madrigal, Jazmin, Moreno Mayar, J. Víctor, Renaud, Gabriel, Cruz-Dávalos, D. I., Johannesdóttir, E., Watson, J., Robson-Brown, K., Pearson, A., Helgason, A., Gilbert, M Thomas P & Schroeder, Hannes, 2019, bioRxiv, 16 p.Research output: Working paper › Preprint › Research
- Published
Unraveling ancestry, kinship, and violence in a Late Neolithic mass grave
Schroeder, H., Margaryan, A., Szmyt, M., Theulot, B., Włodarczak, P., Rasmussen, S., Gopalakrishnan, S., Szczepanek, A., Konopka, T., Jensen, T. Z. T., Witkowska, B., Wilk, S., Przybyła, M. M., Pospieszny, Ł., Sjögren, K-G., Belka, Z., Olsen, J., Kristiansen, K., Willerslev, E., Frei, K. M. & 3 others, , 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 22, p. 10705-10710Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Promises and pitfalls of using high-throughput sequencing for diet analysis
Alberdi, Antton, Aizpurua Arrieta, Ostaizka, Bohmann, Kristine, Gopalakrishnan, Shyam, Lynggaard, Christina Islas, Nielsen, M. & Gilbert, M Thomas P, Mar 2019, In: Molecular Ecology Resources. 19, 2, p. 327-348Research output: Contribution to journal › Review › Research › peer-review
- 2020
- Published
Adapting Genotyping-by-Sequencing and Variant Calling for Heterogeneous Stock Rats
Gileta, A. F., Gao, J., Chitre, A. S., Bimschleger, H., St Pierre, C. L., Gopalakrishnan, Shyam & Palmer, A. A., 2020, In: G3: Genes, Genomes, Genetics (Bethesda). 10, 7, p. 2195-2205 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Arctic-adapted dogs emerged at the Pleistocene-Holocene transition
Sinding, M. H. S., Gopalakrishnan, S., Ramos-Madrigal, J., de Manuel, M., Pitulko, V. V., Kuderna, L., Feuerborn, T. R., Frantz, L. A. F., Vieira, F. G., Niemann, J., Samaniego Castruita, J. A., Carøe, C., Andersen-Ranberg, E. U., Jordan, P. D., Pavlova, E. Y., Nikolskiy, P. A., Kasparov, A. K., Ivanova, V. V., Willerslev, E., Skoglund, P. & 15 others, , 2020, In: Science (New York, N.Y.). 368, 6498, p. 1495-1499 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomes of Pleistocene Siberian Wolves Uncover Multiple Extinct Wolf Lineages
Ramos-Madrigal, J., Sinding, M-H. S., Carøe, C., Mak, S. S. T., Niemann, J., Samaniego Castruita, J. A., Fedorov, S., Kandyba, A., Germonpré, M., Bocherens, H., Feuerborn, T. R., Pitulko, V. V., Pavlova, E. Y., Nikolskiy, P. A., Kasparov, A. K., Ivanova, V. V., Larson, G., Frantz, L. A. F., Willerslev, E., Meldgaard, M. & 7 others, , 2020, In: Current biology : CB. 31, p. 198-206Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomic Adaptations and Evolutionary History of the Extinct Scimitar-Toothed Cat, Homotherium latidens
Barnett, R., Westbury, M. V., Sandoval-Velasco, M., Vieira, F. G., Jeon, S., Zazula, G., Martin, M. D., Ho, S. Y. W., Mather, N., Gopalakrishnan, S., Ramos-Madrigal, J., de Manuel, M., Zepeda-Mendoza, M. L., Antunes, A., Baez, A. C., De Cahsan, B., Larson, G., O’Brien, S. J., Eizirik, E., Johnson, W. E. & 11 others, , 2020, In: Current Biology. 30, p. 5018-5025Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Holo-Omics: Integrated Host-Microbiota Multi-omics for Basic and Applied Biological Research
Jessen, Lasse Nyholm, Koziol, Adam Leslie, Marcos, S., Botnen, A. B., Aizpurua Arrieta, Ostaizka, Gopalakrishnan, Shyam, Limborg, Morten Tønsberg, Gilbert, M Thomas P & Alberdi, Antton, 2020, In: iScience. 23, 8, p. 1-16 101414.Research output: Contribution to journal › Review › Research › peer-review
ID: 140603020
Most downloads
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473
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Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
331
downloads
Using DNA metabarcoding for simultaneous inference of common vampire bat diet and population structure
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
285
downloads
The wolf reference genome sequence (Canis lupus lupus) and its implications for Canis spp. population genomics
Research output: Contribution to journal › Journal article › Research › peer-review
Published