Shyam Gopalakrishnan

Shyam Gopalakrishnan

Associate Professor

Member of:

    ORCID: 0000-0002-2004-6810

    Publication year:
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    26 - 50 out of 65Page size: 25
    1. 2020
    2. Published

      Influence of past climate change on phylogeography and demographic history of narwhals, Monodon monoceros

      Louis, Marie Georgette Yolande J, Skovrind, Mikkel, Samaniego Castruita, J. A., Garilao, C., Kaschner, K., Gopalakrishnan, Shyam, Haile, James Seymour, Lydersen, C., Kovacs, K. M., Garde, E., Heide-Jørgensen, M. P., Postma, L., Ferguson, S. H., Willerslev, Eske & Lorenzen, Eline, 2020, In: Proceedings of the Royal Society B: Biological Sciences. 287, 1925, 9 p., 20192964.

      Research output: Contribution to journal › Journal article › Research › peer-review

    3. Published

      Interspecific Gene Flow and the Evolution of Specialization in Black and White Rhinoceros

      Moodley, Y., Westbury, M., Russo, I. M., Gopalakrishnan, Shyam, Rakotoarivelo, A., Olsen, R., Prost, S., Tunstall, T., Ryder, O. A., Dalén, L. & Bruford, M. W., 2020, In: Molecular Biology and Evolution. 37, 11, p. 3105-3117 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    4. Published

      Multi-omic detection of Mycobacterium leprae in archaeological human dental calculus

      Fotaki, Anna Katerina, Denham, S. D., Mackie, Meaghan, Iraeta Orbegozo, Miren, Mylopotamitaki, Dorothea, Gopalakrishnan, Shyam, Sicheritz-Pontén, Thomas, Olsen, Jesper Velgaard, Cappellini, Enrico, KU, thw266, Christophersen, A., Gilbert, M Thomas P & Vågene, Åshild Joanne, 2020, In: Philosophical Transactions of the Royal Society B: Biological Sciences. 375, 1812, 10 p., 20190584.

      Research output: Contribution to journal › Journal article › Research › peer-review

    5. Published

      Plasmodium vivax Malaria Viewed through the Lens of an Eradicated European Strain

      van Dorp, L., Gelabert, P., Rieux, A., de Manuel, M., de-Dios, T., Gopalakrishnan, Shyam, Caroe, C., Sandoval-Velasco, Marcela, Fregel, R., Olalde, I., Escosa, R., Aranda, C., Huijben, S., Mueller, I., Marques-Bonet, T., Balloux, F., Gilbert, M Thomas P & Lalueza-Fox, C., 2020, In: MOLECULAR BIOLOGY AND EVOLUTION . 37, 3, p. 773-785 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    6. Published

      The evolutionary history of extinct and living lions

      de Manuel, M., Barnett, R., Sandoval-Velasco, M., Yamaguchi, N., Vieira, F. G., Mendoza, M. L. Z., Liu, S., Martin, M. D., Sinding, M-H. S., Mak, S. S. T., Caroe, C., Liu, S., Guo, C., Zheng, J., Zazula, G., Baryshnikov, G., Eizirik, E., Koepfli, K-P., Johnson, W. E., Antunes, A. & 9 others, Sicheritz-Pontén, Thomas, Gopalakrishnan, Shyam, Larson, G., Yang, H., O'Brien, S. J., Hansen, Anders Johannes, KU, thw266, Marques-Bonet, T. & Gilbert, M Thomas P, 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 20, p. 10927-10934 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    7. 2021
    8. Published

      Ancient and modern genomes unravel the evolutionary history of the rhinoceros family

      Liu, S., Westbury, M. V., Dussex, N., Mitchell, K. J., Sinding, M. H. S., Heintzman, P. D., Duchêne, D. A., Kapp, J. D., von Seth, J., Heiniger, H., Sánchez-Barreiro, F., Margaryan, A., André-Olsen, R., De Cahsan, B., Meng, G., Yang, C., Chen, L., van der Valk, T., Moodley, Y., Rookmaaker, K. & 19 others, Bruford, M. W., Ryder, O., Steiner, C., Sonsbeek, L. G. R. B., Vartanyan, S., Guo, C., Cooper, A., Kosintsev, P., Kirillova, I., Lister, A. M., Marques-Bonet, T., Gopalakrishnan, Shyam, Dunn, Rob, Lorenzen, Eline, Shapiro, B., KU, thw266, Antoine, P. O., Dalén, L. & Gilbert, M Thomas P, 2021, In: Cell. 184, 19, p. 4874-4885.e16

      Research output: Contribution to journal › Journal article › Research › peer-review

    9. Published

      Biodiversity Soup II: A bulk-sample metabarcoding pipeline emphasizing error reduction

      Yang, C., Bohmann, Kristine, Wang, X., Cai, W., Wales, N., Ding, Z., Gopalakrishnan, Shyam & Yu, D. W., 2021, In: Methods in Ecology and Evolution. 12, 7, p. 1252-1264 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    10. Published

      Contrasting genetic signal of recolonization after rainforest fragmentation in African trees with different dispersal abilities

      Piñeiro, R., Hardy, O. J., Tovar, C., Gopalakrishnan, Shyam, Vieira, Filipe Garrett & Gilbert, M Thomas P, 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 27, 9 p., e2013979118.

      Research output: Contribution to journal › Journal article › Research › peer-review

    11. Published

      Dire wolves were the last of an ancient New World canid lineage

      Perri, A. R., Mitchell, K. J., Mouton, A., Alvarez-Carretero, S., Hulme-Beaman, A., Haile, J., Jamieson, A., Meachen, J., Lin, A. T., Schubert, B. W., Ameen, C., Antipina, E. E., Bover, P., Brace, S., Carmagnini, A., Carøe, C., Samaniego Castruita, J. A., Chatters, J. C., Dobney, K., dos Reis, M. & 29 others, Evin, A., Gaubert, P., Gopalakrishnan, Shyam, Gower, Graham, Heiniger, H., Helgen, K. M., Kapp, J., Kosintsev, P. A., Linderholm, A., Ozga, A. T., Presslee, S., Salis, A. T., Saremi, N. F., Shew, C., Skerry, K., Taranenko, D. E., Thompson, M., Sablin, M. V., Kuzmin, Y. V., Collins, Matthew James, Sinding, M. S., Gilbert, M Thomas P, Stone, A. C., Shapiro, B., Van Valkenburgh, B., Wayne, R. K., Larson, G., Cooper, A. & Frantz, L. A. F., 2021, In: Nature. 591, p. 87-91

      Research output: Contribution to journal › Journal article › Research › peer-review

    12. Published

      Evolutionary history of the extinct Sardinian dhole

      Ciucani, M. M., Jensen, J. K., Sinding, M. S., Smith, O., Lucenti, S. B., Rosengren, E., Rook, L., Tuveri, C., Arca, M., Cappellini, Enrico, Galaverni, M., Randi, E., Guo, C., KU, thw266, Sicheritz-Pontén, Thomas, Dalén, L., Gilbert, M Thomas P & Gopalakrishnan, Shyam, 2021, In: Current Biology. 31, 24, p. 5571-5579.e6 16 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    13. Published

      Extended survival of Pleistocene Siberian wolves into the early 20th century on the island of Honshu

      Niemann, Jonas, Gopalakrishnan, Shyam, Yamaguchi, N., Ramos Madrigal, Jazmin, Wales, N., Gilbert, M Thomas P & Sinding, M. S., 2021, In: iScience. 24, 25 p., 101904.

      Research output: Contribution to journal › Journal article › Research › peer-review

    14. Published

      Historical population declines prompted significant genomic erosion in the northern and southern white rhinoceros (Ceratotherium simum)

      Sánchez-Barreiro, F., Gopalakrishnan, Shyam, Ramos Madrigal, Jazmin, Westbury, Michael Vincent, de Manuel, M., Margaryan, Ashot, Ciucani, M. M., Vieira, Filipe Garrett, Patramanis, Ioannis, Kalthoff, D. C., Timmons, Z., Sicheritz-Pontén, Thomas, Dalén, L., Ryder, O. A., KU, thw266, Marques-Bonet, T., Moodley, Y. & Gilbert, M Thomas P, 2021, In: Molecular Ecology. 30, 23, p. 6355-6369 15 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    15. Published

      Mitochondrial genomes of Danish vertebrate species generated for the national DNA reference database, DNAmark

      Margaryan, Ashot, Noer, Christina, Richter, S. R., Restrup, M. E., Bülow‐hansen, J. L., Leerhøi, Frederik, Arfaoui, Emilia Marie Rolander, Gopalakrishnan, Shyam, Carøe, C., Gilbert, M Thomas P & Bohmann, Kristine, 2021, In: Environmental DNA. 3, 2, p. 472-480

      Research output: Contribution to journal › Journal article › Research › peer-review

    16. Published

      Modern Siberian dog ancestry was shaped by several thousand years of Eurasian-wide trade and human dispersal

      Feuerborn, T. R., Carmagnini, A., Losey, R. J., Nomokonova, T., Askeyev, A., Askeyev, I., Askeyev, O., Antipina, E. E., Appelt, M., Bachura, O. P., Beglane, F., Bradley, D. G., Daly, K. G., Gopalakrishnan, S., Gregersen, K. M., Guo, C., Gusev, A. V., Jones, C., Kosintsev, P. A., Kuzmin, Y. V. & 17 others, Mattiangeli, V., Perri, A. R., Plekhanov, A. V., Ramos Madrigal, Jazmin, Schmidt, A. L., Shaymuratova, D., Smith, O., Yavorskaya, L. V., KU, thw266, Willerslev, Eske, Meldgaard, Morten, Gilbert, M Thomas P, Larson, G., Dalén, L., Hansen, Anders Johannes, Sinding, Mikkel Holger Strander & Frantz, L., 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 39, e2100338118.

      Research output: Contribution to journal › Journal article › Research › peer-review

    17. Published

      The genome sequence of the grey wolf, Canis lupus Linnaeus 1758

      Sinding, Mikkel Holger Strander, Gopalakrishnan, Shyam, Raundrup, K., Dalén, L., Threlfall, J., Gilbert, M Thomas P, Darwin Tree of Life Barcoding collective, D. T. O. L. B. C., Wellcome Sanger Institute Tree of Life programme, W. S. I. T. O. L. P., Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective, W. S. I. S. O. D. P. C. & Tree of Life Core Informatics collective, Darwin Tree of Life Consortium, T. O. L. C. I. C. D. T. O. L. C., 2021, In: Wellcome Open Research. 6, 12 p., 310.

      Research output: Contribution to journal › Journal article › Research › peer-review

    18. Published

      eDNA‐based biomonitoring at an experimental German vineyard to characterize how management regimes shape ecosystem diversity

      Rasmussen, Jacob Agerbo, Nielsen, M., Mak, Sarah Siu Tze, Döring, J., Klincke, F., Gopalakrishnan, Shyam, Dunn, Rob, Kauer, R. & Gilbert, M Thomas P, 2021, In: Environmental DNA. 3, 1, p. 70-82 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    19. Published

      Circumpolar phylogeography and demographic history of beluga whales reflect past climatic fluctuations

      Skovrind, M., Louis, M., Westbury, M. V., Garilao, C., Kaschner, K., Castruita, J. A. S., Gopalakrishnan, S., Knudsen, S. W., Haile, J. S., Dalén, L., Meshchersky, I. G., Shpak, O. V., Glazov, D. M., Rozhnov, V. V., Litovka, D. I., Krasnova, V. V., Chernetsky, A. D., Bel'kovich, V. M., Lydersen, C., Kovacs, K. M. & 4 others, Heide-Jørgensen, M. P., Postma, L., Ferguson, S. H. & Lorenzen, Eline, Jun 2021, In: Molecular Ecology. 30, 11, p. 2543-2559 17 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    20. 2022
    21. Published

      A multi-omics approach unravels metagenomic and metabolic alterations of a probiotic and synbiotic additive in rainbow trout (Oncorhynchus mykiss)

      Rasmussen, Jacob Agerbo, Villumsen, Kasper Rømer, Ernst, M., Hansen, M., Forberg, T., Gopalakrishnan, Shyam, Gilbert, M Thomas P, Bojesen, Anders Miki, Kristiansen, Karsten & Limborg, Morten Tønsberg, 2022, In: Microbiome. 10, 19 p., 21.

      Research output: Contribution to journal › Journal article › Research › peer-review

    22. Published

      Analysis of independent cohorts of outbred CFW mice reveals novel loci for behavioral and physiological traits and identifies factors determining reproducibility

      Zou, J., Gopalakrishnan, Shyam, Parker, C. C., Nicod, J., Mott, R., Cai, N., Lionikas, A., Davies, R. W., Palmer, A. A. & Flint, J., 2022, In: G3: Genes, Genomes, Genetics. 12, 1, 13 p., jkab394.

      Research output: Contribution to journal › Journal article › Research › peer-review

    23. Published

      Ancient Maltese genomes and the genetic geography of Neolithic Europe

      Ariano, B., Mattiangeli, V., Breslin, E. M., Parkinson, E. W., McLaughlin, T. R., Thompson, J. E., Power, R. K., Stock, J. T., Mercieca-Spiteri, B., Stoddart, S., Malone, C., Gopalakrishnan, Shyam, Cassidy, L. M. & Bradley, D. G., 2022, In: Current Biology. 32, 12, p. 2668-2680.e6

      Research output: Contribution to journal › Journal article › Research › peer-review

    24. Published

      Benchmarking freely available HLA typing algorithms across varying genes, coverages and typing resolutions

      Thuesen, N. H., Klausen, M. S., Gopalakrishnan, Shyam, Trolle, T. & Renaud, Gabriel, 2022, In: Frontiers in Immunology. 13, 15 p., 987655.

      Research output: Contribution to journal › Journal article › Research › peer-review

    25. Published

      Conservation genomics of the endangered Seychelles Magpie-Robin (Copsychus sechellarum): a unique insight into the history of a precious endemic bird

      Cavill, Emily Louisa, Gopalakrishnan, Shyam, Puetz, Lara Christine, Ribeiro, Â. M., Mak, Sarah Siu Tze, Rodrigues da Fonseca, Rute Andreia, Antunes Pacheco, George, Dunlop, B., Accouche, W., Shah, N., Zora, A., Calabrese, L., Genner, M., Jones, G., Guo, C., KU, thw266 & Gilbert, M Thomas P, 2022, In: Ibis. 164, 2, p. 396-410 15 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    26. Published

      Grey wolf genomic history reveals a dual ancestry of dogs

      Bergström, A., Stanton, D. W. G., Taron, U. H., Frantz, L., Sinding, M. H. S., Ersmark, E., Pfrengle, S., Cassatt-Johnstone, M., Lebrasseur, O., Girdland-Flink, L., Fernandes, D. M., Ollivier, M., Speidel, L., Gopalakrishnan, S., Westbury, M. V., Ramos-Madrigal, J., Feuerborn, T. R., Reiter, E., Gretzinger, J., Münzel, S. C. & 61 others, Swali, P., Conard, N. J., Carøe, C., Haile, James Seymour, Linderholm, A., Androsov, S., Barnes, I., Baumann, C., Benecke, N., Bocherens, H., Brace, S., Carden, R. F., Drucker, D. G., Fedorov, S., Gasparik, M., Germonpré, M., Grigoriev, S., Groves, P., Hertwig, S. T., Ivanova, V. V., Janssens, L., Jennings, R. P., Kasparov, A. K., Kirillova, I. V., Kurmaniyazov, I., Kuzmin, Y. V., Kosintsev, P. A., Lázničková-Galetová, M., Leduc, C., Nikolskiy, P., Nussbaumer, M., O’Drisceoil, C., Orlando, L., Outram, A., Pavlova, E. Y., Perri, A. R., Pilot, M., Pitulko, V. V., Plotnikov, V. V., Protopopov, A. V., Rehazek, A., Sablin, M., Seguin-Orlando, A., Storå, J., Verjux, C., Zaibert, V. F., Zazula, G., Crombé, P., Hansen, Anders Johannes, Willerslev, Eske, Leonard, J. A., Götherström, A., Pinhasi, R., Schuenemann, V. J., Hofreiter, M., Gilbert, M Thomas P, Shapiro, B., Larson, G., Krause, J., Dalén, L. & Skoglund, P., 2022, In: Nature. 607, 7918, p. 313-320

      Research output: Contribution to journal › Journal article › Research › peer-review

    27. Published

      Pervasive Phylogenomic Incongruence Underlies Evolutionary Relationships in Eyebrights (Euphrasia, Orobanchaceae)

      Garrett, P., Becher, H., Gussarova, G., dePamphilis, C. W., Ness, R. W., Gopalakrishnan, Shyam & Twyford, A. D., 2022, In: Frontiers in Plant Science. 13, 16 p., 869583.

      Research output: Contribution to journal › Journal article › Research › peer-review

    28. Published

      Probing the genomic limits of de-extinction in the Christmas Island rat

      Lin, J., Duchene, David, Carøe, C., Smith, O., Ciucani, M. M., Niemann, Jonas, Richmond, D., Greenwood, A. D., MacPhee, R., KU, thw266, Gopalakrishnan, Shyam & Gilbert, M Thomas P, 2022, In: Current Biology. 32, 7, p. 1650-1656.e3

      Research output: Contribution to journal › Journal article › Research › peer-review

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    ID: 140603020