Thomas Sicheritz-Pontén
Professor
Section for Hologenomics
Øster Farimagsgade 5, 1014 København K
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inPhocus: “Virus Amigos?” The Journey of the Development of Phage-Based Biocontrol in the Latin American Poultry and Aquaculture Industries
Rangel Piñeros, Guillermo Andres, Sicheritz-Pontén, Thomas & Clokie, M. R. J., 2021, In: PHAGE: Therapy, Applications, and Research. 2, 1, p. 3-6Research output: Contribution to journal › Journal article › Research › peer-review
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inPhocus: The Diverse Landscape of Phage Studies in the Association of Southeast Asian Nations Region
Rajandas, Heera, Parimannan, Sivachandran, Sicheritz-Pontén, Thomas & Clokie, M. R. J., 2021, In: PHAGE: Therapy, Applications, and Research. 2, 3, p. 94-99Research output: Contribution to journal › Journal article › Research › peer-review
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inPhocus: Perspectives of the Application of Bacteriophages in Poultry and Aquaculture Industries Based on Varms in China
Zhao, X., Zhang, Q., Sicheritz-Pontén, Thomas, Liu, Y. & Clokie, M. R. J., 2021, In: PHAGE: Therapy, Applications, and Research. 2, 2, p. 69-74Research output: Contribution to journal › Journal article › Research › peer-review
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inPhocus: A Local Perspective on Phage-Based Biocontrol in Agriculture and Aquaculture in India
Kondabagil, K., Sicheritz-Pontén, Thomas & Clokie, M. R. J., 2020, In: PHAGE: Therapy, Applications, and Research. 1, 4, p. 169-173Research output: Contribution to journal › Journal article › Research › peer-review
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The population genomic legacy of the second plague pandemic
Gopalakrishnan, S., Ebenesersdóttir, S. S., Lundstrøm, I. K. C., Turner-Walker, G., Moore, K. H. S., Luisi, P., Margaryan, A., Martin, M. D., Ellegaard, M. R., Magnússon, Ó., Sigurðsson, Á., Snorradóttir, S., Magnúsdóttir, D. N., Laffoon, J. E., van Dorp, L., Liu, X., Moltke, I., Ávila-Arcos, M. C., Schraiber, J. G., Rasmussen, S. & 40 others, , 2022, In: Current Biology. 32, 21, p. 4743-4751.e6Research output: Contribution to journal › Journal article › Research › peer-review
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The microbial composition of dried fish prepared according to Greenlandic Inuit traditions and industrial counterparts
Hauptmann, A. L., Paulová, P., Castro-Mejía, J. L., Hansen, L. H., Sicheritz-Pontén, Thomas, Mulvad, G. & Nielsen, Dennis Sandris, 2020, In: Food Microbiology. 85, 11 p., 103305.Research output: Contribution to journal › Journal article › Research › peer-review
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The evolutionary history of extinct and living lions
de Manuel, M., Barnett, R., Sandoval-Velasco, M., Yamaguchi, N., Vieira, F. G., Mendoza, M. L. Z., Liu, S., Martin, M. D., Sinding, M-H. S., Mak, S. S. T., Caroe, C., Liu, S., Guo, C., Zheng, J., Zazula, G., Baryshnikov, G., Eizirik, E., Koepfli, K-P., Johnson, W. E., Antunes, A. & 9 others, , 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 20, p. 10927-10934 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
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The Third Annual Meeting of the European Virus Bioinformatics Center
Hufsky, F., Ibrahim, B., Modha, S., Clokie, M. R. J., Deinhardt-Emmer, S., Dutilh, B. E., Lycett, S., Simmonds, P., Thiel, V., Abroi, A., Adriaenssens, E. M., Escalera-Zamudio, M., Kelly, J. N., Lamkiewicz, K., Lu, L., Susat, J., Sicheritz-Pontén, Thomas, Robertson, D. L. & Marz, M., 2019, In: Viruses. 11, 5, 19 p., v11050420.Research output: Contribution to journal › Journal article › Research › peer-review
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The Effect of Oxygen Availability on Bacteriophage Infection: A Review
Hodges, F. E., Sicheritz-Pontén, Thomas & Clokie, M. R. J., 2021, In: PHAGE: Therapy, Applications, and Research. 2, 1, p. 16-25Research output: Contribution to journal › Review › Research › peer-review
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Rethinking Phage Ecology by Rooting it Within an Established Plant Framework
Clokie, M. R. J., Blasdel, B. G., Demars, B. O. L. & Sicheritz-Pontén, Thomas, 2020, In: PHAGE: Therapy, Applications, and Research. 1, 3, p. 121-136Research output: Contribution to journal › Journal article › Research › peer-review
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Reflections on 2022: A Progressive Year for Phage Therapy
Clokie, M. & Sicheritz-Pontén, Thomas, 2022, In: PHAGE: Therapy, Applications, and Research. 3, 4, p. 181-182 2 p.Research output: Contribution to journal › Editorial › Research › peer-review
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Rapid discovery of novel prophages using biological feature engineering and machine learning
Sirén, K., Millard, A., Petersen, Bent, Gilbert, M Thomas P, Clokie, M. R. J. & Sicheritz-Pontén, Thomas, 2021, In: NAR Genomics and Bioinformatics. 3, 1, 10 p., lqaa109.Research output: Contribution to journal › Journal article › Research › peer-review
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Protective role of the vulture facial skin and gut microbiomes aid adaptation to scavenging
Zepeda Mendoza, M. L., Roggenbuck, M., Manzano Vargas, K., Hansen, L. H., Brunak, Søren, Gilbert, M Thomas P & Sicheritz-Pontén, Thomas, 2018, In: Acta Veterinaria Scandinavica. 60, 1, p. 1-19 19 p., 61.Research output: Contribution to journal › Journal article › Research › peer-review
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Phenotypic Characterization and Comparative Genomic Analysis of Novel Salmonella Bacteriophages Isolated from a Tropical Rainforest
Mutusamy, P., Singh, K. K. B., Yin, L. S., Petersen, Bent, Sicheritz-Pontén, Thomas, Clokie, M. R. J., Loke, S., Millard, A., Parimannan, Sivachandran & Rajandas, Heera, 2023, In: International Journal of Molecular Sciences. 24, 4, 15 p., 3678.Research output: Contribution to journal › Journal article › Research › peer-review
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PhageLeads: Rapid Assessment of Phage Therapeutic Suitability Using an Ensemble Machine Learning Approach
Yukgehnaish, K., Rajandas, Heera, Parimannan, Sivachandran, Manickam, R., Marimuthu, K., Petersen, Bent, Clokie, M. R. J., Millard, A. & Sicheritz-Pontén, Thomas, 2022, In: Viruses. 14, 2, 16 p., 342.Research output: Contribution to journal › Journal article › Research › peer-review
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Phage Therapy: Insights from the Past, the Great Need of the Present, and Glimpses into the Future
Clokie, M. R. J. & Sicheritz-Pontén, Thomas, 2022, In: PHAGE: Therapy, Applications, and Research. 3, 2, p. 65-66 2 p.Research output: Contribution to journal › Editorial › Research › peer-review
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Multi-omic detection of Mycobacterium leprae in archaeological human dental calculus
Fotaki, Anna Katerina, Denham, S. D., Mackie, Meaghan, Iraeta Orbegozo, Miren, Mylopotamitaki, Dorothea, Gopalakrishnan, Shyam, Sicheritz-Pontén, Thomas, Olsen, Jesper Velgaard, Cappellini, Enrico, KU, thw266, Christophersen, A., Gilbert, M Thomas P & Vågene, Åshild Joanne, 2020, In: Philosophical Transactions of the Royal Society B: Biological Sciences. 375, 1812, 10 p., 20190584.Research output: Contribution to journal › Journal article › Research › peer-review
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Microbiota in foods from Inuit traditional hunting
Hauptmann, A. L., Paulová, P., Hansen, Lars Hestbjerg, Sicheritz-Pontén, Thomas, Mulvad, G. & Nielsen, Dennis Sandris, 2020, In: PLoS ONE. 15, 1, 15 p., e0227819.Research output: Contribution to journal › Journal article › Research › peer-review
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Lungs, Liposomes, Libraries, and Likely Interactions Between Phages and Eukaryotic Cells
Clokie, M. & Sicheritz-Pontén, Thomas, 2023, In: PHAGE: Therapy, Applications, and Research. 4, 1, p. 1-2 2 p.Research output: Contribution to journal › Editorial › Research › peer-review
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Kouprey (Bos sauveli) genomes unveil polytomic origin of wild Asian Bos
Sinding, M. S., Ciucani, M. M., Ramos Madrigal, Jazmin, Carmagnini, A., Rasmussen, Jacob Agerbo, Feng, S., Chen, G., Vieira, Filipe Garrett, Mattiangeli, V., Ganjoo, R. K., Larson, G., Sicheritz-Pontén, Thomas, Petersen, Bent, Frantz, L., Gilbert, M Thomas P & Bradley, D. G., 2021, In: iScience. 24, 11, 18 p., 103226.Research output: Contribution to journal › Journal article › Research › peer-review
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InPhocus: Current State and Challenges of Phage Research in Singapore
Verma, N. K., Tan, S. J., Chen, J., Chen, H., Ismail, M. H., Rice, S. A., Bifani, P., Hariharan, S., Paul, V. D., Sriram, B., Dam, L. C., Chan, C. C., Ho, P., Goh, B. C., Chung, S. J., Goh, K. C. M., Thong, S. H., Kwa, A. L. H., Ostrowski, A., Aung, T. T. & 9 others, , 2022, In: PHAGE: Therapy, Applications, and Research. 3, 1, p. 6-11 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
Identification of common bacterial antigenic markers from bovine digital dermatitis lesions using meta-transcriptomics in combination with high-density peptide-microarrays
Nielsen, M. W., Marcatili, P., Sicheritz-Pontén, Thomas, Jensen, Tim Kåre, Schafer-Nielsen, C., Boye, M., Nielsen, M. & Schou, K. K., 2016.Research output: Contribution to conference › Conference abstract for conference › Research › peer-review
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Historical population declines prompted significant genomic erosion in the northern and southern white rhinoceros (Ceratotherium simum)
Sánchez-Barreiro, F., Gopalakrishnan, Shyam, Ramos Madrigal, Jazmin, Westbury, Michael Vincent, de Manuel, M., Margaryan, Ashot, Ciucani, M. M., Vieira, Filipe Garrett, Patramanis, Ioannis, Kalthoff, D. C., Timmons, Z., Sicheritz-Pontén, Thomas, Dalén, L., Ryder, O. A., KU, thw266, Marques-Bonet, T., Moodley, Y. & Gilbert, M Thomas P, 2021, In: Molecular Ecology. 30, 23, p. 6355-6369 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Historic Sampling of a Vanishing Beast: Population Structure and Diversity in the Black Rhinoceros
Sánchez-Barreiro, F., Westbury, Binia De Cahsan, Westbury, Michael Vincent, Sun, Xin, Margaryan, Ashot, Fontsere, Claudia, Bruford, M. W., Russo, I. M., Kalthoff, D. C., Sicheritz-Pontén, Thomas, Petersen, Bent, Dalén, L., KU, thw266, Marquès-Bonet, T., Gilbert, M Thomas P & Moodley, Y., 2023, In: Molecular Biology and Evolution. 40, 9, 19 p., msad180.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 202359275
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225
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The microbial composition of dried fish prepared according to Greenlandic Inuit traditions and industrial counterparts
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
176
downloads
Protective role of the vulture facial skin and gut microbiomes aid adaptation to scavenging
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
143
downloads
High-Throughput Sequencing-Based Investigation of Viruses in Human Cancers by Multienrichment Approach
Research output: Contribution to journal › Journal article › Research › peer-review
Published