Thomas Sicheritz-Pontén
Professor
Section for Hologenomics
Øster Farimagsgade 5, 1014 København K
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Diverse Prophage Elements of Salmonella enterica Serovars Show Potential Roles in Bacterial Pathogenicity
Andrews, K., Landeryou, T., Sicheritz-Pontén, Thomas & Nale, J. Y., 2024, In: Cells. 13, 6, 17 p., 514.Research output: Contribution to journal › Journal article › Research › peer-review
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Contaminating viral sequences in high-throughput sequencing viromics: a linkage study of 700 sequencing libraries
Asplund, M., Kjartansdóttir, K. R., Mollerup, S., Vinner, L., Fridholm, H., Herrera, J. A. R., Friis-Nielsen, J., Hansen, T. A., Jensen, R. H., Nielsen, I. B., Richter, S. R., Rey-Iglesia, A., Matey-Hernandez, M. L., Alquezar-Planas, D. E., Olsen, P. V. S., Sicheritz-Pontén, T., Willerslev, E., Lund, O., Brunak, S., Mourier, T. & 3 others, , 2019, In: Clinical Microbiology and Infection. 25, 10, p. 1277-1285Research output: Contribution to journal › Journal article › Research › peer-review
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Distinct life histories impact dikaryotic genome evolution in the rust fungus Puccinia striiformis causing stripe rust in wheat
Chen, Yan-Jun, Schwessinger, B., Tien, R., Vogt, J. K., Sperschneider, J., Nagar, R., McMullan, M., Sicheritz-Pontén, Thomas, Sørensen, C. K., Hovmøller, M. S., Rathjen, J. P. & Justesen, A. F., 2020, In: Genome Biology and Evolution. 12, 5, p. 597-617Research output: Contribution to journal › Journal article › Research › peer-review
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Evolutionary history of the extinct Sardinian dhole
Ciucani, M. M., Jensen, J. K., Sinding, M. S., Smith, O., Lucenti, S. B., Rosengren, E., Rook, L., Tuveri, C., Arca, M., Cappellini, Enrico, Galaverni, M., Randi, E., Guo, C., KU, thw266, Sicheritz-Pontén, Thomas, Dalén, L., Gilbert, M Thomas P & Gopalakrishnan, Shyam, 2021, In: Current Biology. 31, 24, p. 5571-5579.e6 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Lungs, Liposomes, Libraries, and Likely Interactions Between Phages and Eukaryotic Cells
Clokie, M. & Sicheritz-Pontén, Thomas, 2023, In: PHAGE: Therapy, Applications, and Research. 4, 1, p. 1-2 2 p.Research output: Contribution to journal › Editorial › Research › peer-review
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Reflections on 2022: A Progressive Year for Phage Therapy
Clokie, M. & Sicheritz-Pontén, Thomas, 2022, In: PHAGE: Therapy, Applications, and Research. 3, 4, p. 181-182 2 p.Research output: Contribution to journal › Editorial › Research › peer-review
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Phage Therapy: Insights from the Past, the Great Need of the Present, and Glimpses into the Future
Clokie, M. R. J. & Sicheritz-Pontén, Thomas, 2022, In: PHAGE: Therapy, Applications, and Research. 3, 2, p. 65-66 2 p.Research output: Contribution to journal › Editorial › Research › peer-review
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Rethinking Phage Ecology by Rooting it Within an Established Plant Framework
Clokie, M. R. J., Blasdel, B. G., Demars, B. O. L. & Sicheritz-Pontén, Thomas, 2020, In: PHAGE: Therapy, Applications, and Research. 1, 3, p. 121-136Research output: Contribution to journal › Journal article › Research › peer-review
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Ancient proteins resolve controversy over the identity of Genyornis eggshell
Demarchi, B., Stiller, Josefin, Grealy, A., Mackie, Meaghan, Deng, Y., Gilbert, M Thomas P, Clarke, J., Legendre, L. J., Boano, R., Sicheritz-Pontén, Thomas, Magee, J., KU, thw266, Bunce, M., Collins, Matthew James & Miller, G., 2022, In: PNAS. 119, 43, 9 p., e2109326119.Research output: Contribution to journal › Journal article › Research › peer-review
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Dense sampling of bird diversity increases power of comparative genomics
Feng, S., Stiller, J., Deng, Y., Armstrong, J., Fang, Q., Hart Reeve, A., Xie, D., Chen, G., Guo, C., Faircloth, B. C., Petersen, B., Wang, Z., Zhou, Q., Diekhans, M., Chen, W., Andreu-Sánchez, S., Margaryan, A., Howard, J. T., Parent, C., Pacheco, G. & 130 others, , 2020, In: Nature. 587, 7833, p. 252-257Research output: Contribution to journal › Journal article › Research › peer-review
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Multi-omic detection of Mycobacterium leprae in archaeological human dental calculus
Fotaki, Anna Katerina, Denham, S. D., Mackie, Meaghan, Iraeta Orbegozo, Miren, Mylopotamitaki, Dorothea, Gopalakrishnan, Shyam, Sicheritz-Pontén, Thomas, Olsen, Jesper Velgaard, Cappellini, Enrico, KU, thw266, Christophersen, A., Gilbert, M Thomas P & Vågene, Åshild Joanne, 2020, In: Philosophical Transactions of the Royal Society B: Biological Sciences. 375, 1812, 10 p., 20190584.Research output: Contribution to journal › Journal article › Research › peer-review
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The population genomic legacy of the second plague pandemic
Gopalakrishnan, S., Ebenesersdóttir, S. S., Lundstrøm, I. K. C., Turner-Walker, G., Moore, K. H. S., Luisi, P., Margaryan, A., Martin, M. D., Ellegaard, M. R., Magnússon, Ó., Sigurðsson, Á., Snorradóttir, S., Magnúsdóttir, D. N., Laffoon, J. E., van Dorp, L., Liu, X., Moltke, I., Ávila-Arcos, M. C., Schraiber, J. G., Rasmussen, S. & 40 others, , 2022, In: Current Biology. 32, 21, p. 4743-4751.e6Research output: Contribution to journal › Journal article › Research › peer-review
Complete mitochondrial genome of the Oriental Hornet, Vespa orientalis F. (Hymenoptera: Vespidae)
Haddad, N. J., Al-Nakeeb, K. A. A., Petersen, Bent, Dalén, L., Blom, N. & Sicheritz-Pontén, Thomas, 2017, In: Mitochondrial DNA Part B: Resources. 2, 1, p. 139-140 2 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Analysis of Selection Methods to Develop Novel Phage Therapy Cocktails Against Antimicrobial Resistant Clinical Isolates of Bacteria
Haines, M. E. K., Hodges, F. E., Nale, J. Y., Mahony, J., van Sinderen, D., Kaczorowska, J., Alrashid, B., Akter, M., Brown, N., Sauvageau, D., Sicheritz-Pontén, Thomas, Thanki, A. M., Millard, A. D., Galyov, E. E. & Clokie, M. R. J., 2021, In: Frontiers in Microbiology. 12, 15 p., 613529.Research output: Contribution to journal › Journal article › Research › peer-review
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The microbial composition of dried fish prepared according to Greenlandic Inuit traditions and industrial counterparts
Hauptmann, A. L., Paulová, P., Castro-Mejía, J. L., Hansen, L. H., Sicheritz-Pontén, Thomas, Mulvad, G. & Nielsen, Dennis Sandris, 2020, In: Food Microbiology. 85, 11 p., 103305.Research output: Contribution to journal › Journal article › Research › peer-review
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Microbiota in foods from Inuit traditional hunting
Hauptmann, A. L., Paulová, P., Hansen, Lars Hestbjerg, Sicheritz-Pontén, Thomas, Mulvad, G. & Nielsen, Dennis Sandris, 2020, In: PLoS ONE. 15, 1, 15 p., e0227819.Research output: Contribution to journal › Journal article › Research › peer-review
Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage
Hendriksen, R. S., Munk, P., Njage, P., van Bunnik, B., McNally, L., Lukjancenko, O., Röder, T., Nieuwenhuijse, D., Pedersen, S. K., Kjeldgaard, J., Kaas, R. S., Clausen, P. T. L. C., Vogt, J. K., Leekitcharoenphon, P., van de Schans, M. G. M., Zuidema, T., de Roda Husman, A. M., Rasmussen, S., Petersen, B., Bego, A. & 108 others, , 2019, In: Nature Communications. 10, 1, 12 p., 1124.Research output: Contribution to journal › Journal article › Research › peer-review
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The Effect of Oxygen Availability on Bacteriophage Infection: A Review
Hodges, F. E., Sicheritz-Pontén, Thomas & Clokie, M. R. J., 2021, In: PHAGE: Therapy, Applications, and Research. 2, 1, p. 16-25Research output: Contribution to journal › Review › Research › peer-review
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The Third Annual Meeting of the European Virus Bioinformatics Center
Hufsky, F., Ibrahim, B., Modha, S., Clokie, M. R. J., Deinhardt-Emmer, S., Dutilh, B. E., Lycett, S., Simmonds, P., Thiel, V., Abroi, A., Adriaenssens, E. M., Escalera-Zamudio, M., Kelly, J. N., Lamkiewicz, K., Lu, L., Susat, J., Sicheritz-Pontén, Thomas, Robertson, D. L. & Marz, M., 2019, In: Viruses. 11, 5, 19 p., v11050420.Research output: Contribution to journal › Journal article › Research › peer-review
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inPhocus: A Local Perspective on Phage-Based Biocontrol in Agriculture and Aquaculture in India
Kondabagil, K., Sicheritz-Pontén, Thomas & Clokie, M. R. J., 2020, In: PHAGE: Therapy, Applications, and Research. 1, 4, p. 169-173Research output: Contribution to journal › Journal article › Research › peer-review
A novel approach to probe host-pathogen interactions of bovine digital dermatitis, a model of a complex polymicrobial infection
Marcatili, P., Nielsen, M. W., Sicheritz-Pontén, Thomas, Jensen, Tim Kåre, Schafer-Nielsen, C., Boye, M., Nielsen, M. & Schou, K. K., 2016, In: BMC Genomics. 17, 13 p., 987.Research output: Contribution to journal › Journal article › Research › peer-review
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High-Throughput Sequencing-Based Investigation of Viruses in Human Cancers by Multienrichment Approach
Mollerup, S., Asplund, M., Friis-Nielsen, J., Kjartansdóttir, K. R., Fridholm, H., Hansen, T. A., Herrera, J. A. R., Barnes, C. J., Jensen, R. H., Richter, S. R., Nielsen, I. B., Pietroni, C., Alquezar-Planas, D. E., Rey-Iglesia, A., Olsen, P. V. S., Rajpert-De Meyts, E., Groth-Pedersen, L., von Buchwald, C., Jensen, D. H., Gniadecki, R. & 20 others, , 15 Oct 2019, In: The Journal of Infectious Diseases. 220, 8, p. 1312-1324Research output: Contribution to journal › Journal article › Research › peer-review
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Complete Genome Sequence of Salmonella enterica Bacteriophage PRF-SP1
Mutusamy, P., Jothi, S. J., Lee, S. Y., Petersen, Bent, Sicheritz-Pontén, Thomas, Clokie, M. R. J., Loke, S., Millard, A., Parimannan, Sivachandran & Rajandas, Heera, 2021, In: Microbiology resource announcements. 10, 47, 3 p., e00965-21.Research output: Contribution to journal › Journal article › Research › peer-review
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Phenotypic Characterization and Comparative Genomic Analysis of Novel Salmonella Bacteriophages Isolated from a Tropical Rainforest
Mutusamy, P., Singh, K. K. B., Yin, L. S., Petersen, Bent, Sicheritz-Pontén, Thomas, Clokie, M. R. J., Loke, S., Millard, A., Parimannan, Sivachandran & Rajandas, Heera, 2023, In: International Journal of Molecular Sciences. 24, 4, 15 p., 3678.Research output: Contribution to journal › Journal article › Research › peer-review
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Diversity, Dynamics and Therapeutic Application of Clostridioides difficile Bacteriophages
Nale, J. Y., Thanki, A. M., Rashid, S. J., Shan, J., Vinner, G. K., Dowah, A. S. A., Cheng, J. K. J., Sicheritz-Pontén, Thomas & Clokie, M. R. J., 2022, In: Viruses. 14, 12, 21 p., 2772.Research output: Contribution to journal › Review › Research › peer-review
ID: 202359275
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222
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The microbial composition of dried fish prepared according to Greenlandic Inuit traditions and industrial counterparts
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
171
downloads
Protective role of the vulture facial skin and gut microbiomes aid adaptation to scavenging
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
142
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High-Throughput Sequencing-Based Investigation of Viruses in Human Cancers by Multienrichment Approach
Research output: Contribution to journal › Journal article › Research › peer-review
Published