Tom Gilbert
Professor
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Whole-genome shotgun sequencing of mitochondria from ancient hair shafts.
Gilbert, M. T. P., Tomsho, L. P., Rendulic, S., Packard, M., Drautz, D. I., Sher, A., Tikhonov, A., Dalén, L., Kuznetsova, T., Kosintsev, P., Campos, P. F., Higham, T., Collins, M. J., Wilson, A. S., Shidlovskiy, F., Buigues, B., Ericson, P. G. P., Germonpré, M., Götherström, A., Iacumin, P. & 11 others, , 2007, In: Science. 317, 5846, p. 1927-30 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Abscence of Yersinia pestis-specific dna in human teeth from five European excavations of putative plague victims
Gilbert, M Thomas P, Cuccui, J., White, W., Lynnerup, Niels, Titball, R., Cooper, A. & Prentice, M., 2004, In: Microbiology. 150, 2, p. 341-354Research output: Contribution to journal › Journal article › Research › peer-review
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DNA extraction from dry museum beetles without conferring external morphological damage.
Gilbert, M Thomas P, Moore, W., Melchior, L. & Worobey, M., 2007, In: PLoS ONE. 2, 3, p. e272Research output: Contribution to journal › Journal article › Research › peer-review
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mtDNA from hair and nail clarifies the genetic relationship of the 15th century Qilakitsoq Inuit mummies
Gilbert, M Thomas P, Djurhuus, D., Melchior, L., Lynnerup, Niels, Worobey, M., Wilson, A. S., Andreasen, C. & Dissing, J., 2007, In: American Journal of Physical Anthropology. 133, 2, p. 847-53 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Ancient mito-chondria DNA from hair
Gilbert, M Thomas P, Wilson, A. S., Bunce, M., Hansen, Anders Johannes, Willerslev, Eske, Shapiro, B., Higham, T. F. G., Richards, M. P., O'Connell, T. C., Tobin, D. J., Janaway, R. C. & Cooper, A., 2004, In: Current Biology. 14, 12Research output: Contribution to journal › Journal article › Research › peer-review
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The isolation of nucleic acids from fixed, paraffin-embedded tissues-which methods are useful when?
Gilbert, M Thomas P, Haselkorn, T., Bunce, M., Sanchez, J. J., Lucas, S. B., Jewell, L. D., Van Marck, E. & Worobey, M., 2007, In: PLoS ONE. 2, 6, p. e537Research output: Contribution to journal › Journal article › Research › peer-review
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Authenticity in ancient DNA studies.
Gilbert, M Thomas P & Willerslev, Eske, 2006, In: Medicina nei Secoli. 18, 3, p. 701-23 22 p.Research output: Contribution to journal › Journal article › Research › peer-review
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DNA from Pre-Clovis Human Coprolites in Oregon, North America.
Gilbert, M Thomas P, Jenkins, D. L., Götherstrom, A., Naveran, N., Sanchez, J. J., Hofreiter, M., Thomsen, P. F., Binladen, J., Higham, T. F. G., Yohe, R. M., Parr, R., Cummings, L. S. & Willerslev, Eske, 2008, In: Science. 320, 5877, p. 786 - 789Research output: Contribution to journal › Journal article › Research › peer-review
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The emergence of HIV/AIDS in the Americas and beyond.
Gilbert, M Thomas P, Rambaut, A., Wlasiuk, G., Spira, T. J., Pitchenik, A. E. & Worobey, M., 2007, In: Proceedings of the National Academy of Science of the United States of America. 104, 47, p. 18566-70 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Intraspecific phylogenetic analysis of Siberian woolly mammoths using complete mitochondrial genomes
Gilbert, M. T. P., Drautz, D. I., Lesk, A. M., Ho, S. Y. W., Qi, J., Ratan, A., Hsu, C-H., Sher, A., Dalén, L., Götherström, A., Tomsho, L. P., Rendulic, S., Packard, M., Campos, P. F., Kuznetsova, T. V., Shidlovskiy, F., Tikhonov, A., Willerslev, E., Iacumin, P., Buigues, B. & 13 others, , 2008, In: Proceedings of the National Academy of Science of the United States of America. 105, 24, p. 8327-32 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Characterization of genetic miscoding lesions caused by postmortem damage
Gilbert, M Thomas P, Hansen, Anders Johannes, Willerslev, Eske, Rudbeck, L., Barnes, I., Cooper, A. & Lynnerup, Niels, 2002, In: American Journal of Human Genetics. 72, 1, p. 48-61 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Recharacterization of ancient DNA miscoding lesions: insights in the era of sequencing-by-synthesis.
Gilbert, M Thomas P, Binladen, J., Miller, W., Wiuf, C., Willerslev, Eske, Poinar, H., Carlson, J. E., Leebens-Mack, J. H. & Schuster, S. C., 2007, In: Nucleic Acids Research. 35, 1, p. 1-10 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Insights into the processes behind the contamination of degraded human teeth and bone samples with exogenous sources of DNA
Gilbert, M Thomas P, Hansen, Anders Johannes, Willerslev, Eske, Turner-Walker, G. & Collins, M., 2006, In: International Journal of Osteoarchaeology. 16, 2, p. 156-164Research output: Contribution to journal › Journal article › Research › peer-review
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Biochemical and physical correlates of DNA contamination in archaeological human bones and teeth excavated at Matera, Italy
Gilbert, M Thomas P, Rudbeck, L., Willerslev, Eske, Hansen, Anders Johannes, Smith, C., Penkman, K. E. H., Prangenberg, K., Nielsen-Marsh, C. M., Jans, M. E., Arthur, P., Lynnerup, Niels, Turner-Walker, G., Biddle, M., Kjolbye-Biddle, B. & Collins, M. J., 2005, In: Journal of Archaeological Science. 32, 5, p. 785-793Research output: Contribution to journal › Journal article › Research › peer-review
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Palaeogenomics of Extinct and Archaic Hominins
Gilbert, M Thomas P & Lalueza-Fox, C., 2023, Handbook of Archaeological Sciences. Pollard, M., Armitage, R. A. & Makarewicz, C. A. (eds.). 2 ed. Wiley-Interscience, Vol. 1. p. 647-656 10 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
Notes and comments: Long-term survival of ancient DNA in Egypt
Gilbert, M Thomas P, Barnes, I., Collins, Matthew James, Smith, C., Eklund, J., Goudsmit, J., Poinar, H. & Cooper, A., 2005, In: American Journal of Physical Anthropology. 128, 1, p. 110-114Research output: Contribution to journal › Comment/debate › Research › peer-review
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Yersinia pestis: one pandemic, two pandemics, three pandemics, more?
Gilbert, M Thomas P, Apr 2014, In: The Lancet Infectious Diseases. 14, 4, p. 264-265 2 p.Research output: Contribution to journal › Comment/debate › Research
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Multiplex PCR with minisequencing as an effective high-throughput SNP typing method for formalin-fixed tissue.
Gilbert, M Thomas P, Sanchez, J. J., Haselkorn, T., Jewell, L. D., Lucas, S. B., Van Marck, E., Børsting, Claus, Morling, Niels & Worobey, M., 2007, In: Electrophoresis. 28, 14, p. 2361-7 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Response to Comment on "Whole-Genome Shotgun Sequencing of Mitochondria from Ancient Hair Shafts"
Gilbert, M Thomas P, Miller, W. & Schuster, S. C., 2008, In: Science. 322, 5903, p. 857Research output: Contribution to journal › Journal article › Research › peer-review
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Paleo-eskimo mtDNA genome reveals matrilineal discontinuity in Greenland
Gilbert, M. T. P., Kivisild, T., Grønnow, B., Andersen, P. K., Metspalu, E., Reidla, M., Tamm, E., Axelsson, E., Götherström, A., Campos, P. F., Rasmussen, M., Metspalu, M., Higham, T. F. G., Schwenninger, J-L., Nathan, R., De Hoog, C-J., Koch, A., Møller, L. N., Andreasen, C., Meldgaard, M. & 3 others, , 2008, In: Science. 320, 5884, p. 1787-1789 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Response to Comment by Poinar et al. on "DNA from Pre-Clovis Human Coprolites in Oregon, North America"
Gilbert, M Thomas P, Jenkins, D., Higham, T., Rasmussen, M., Malmstrom, H., Svensson, E., Sanchez, J., Cummings, L., Yohe, I. R., Hofreiter, M., Götherström, A. & Willerslev, Eske, 2009, In: Science. 325, 5937, p. 148 1 p.Research output: Contribution to journal › Comment/debate › Research
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The mummy returns…and sheds new light on old questions
Gilbert, M Thomas P, 2011, In: Molecular Ecology. 20, 20, p. 4195-4198 4 p.Research output: Contribution to journal › Comment/debate › Research › peer-review
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mapDamage: testing for damage patterns in ancient DNA sequences
Ginolhac, A., Rasmussen, M., Gilbert, M Thomas P, Willerslev, Eske & Orlando, L. A. A., 1 Aug 2011, In: Bioinformatics. 27, 15, p. 2153-2155 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Improving the performance of true single molecule sequencing for ancient DNA
Ginolhac, A., Mouatt, J. T. V., Stenderup, Jesper Tandberg, Rasmussen, M., Stiller, M., Shapiro, B., Zazula, G., Froese, D., Steinmann, K. E., Thompson, J. F., Al-Rasheid, K. A. S., Gilbert, M Thomas P, Willerslev, Eske & Orlando, L. A. A., 10 May 2012, In: BMC Genomics. 13, 14 p., 177.Research output: Contribution to journal › Journal article › Research › peer-review
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Phylogeny of Neotropical Seirinae (Collembola, Entomobryidae) based on mitochondrial genomes
Godeiro, N. N., Antunes Pacheco, George, Liu, Shanlin, Gioia Cipola, N., Berbel-Filho, W. M., Zhang, F., Gilbert, M Thomas P & Bellini, B. C., 2020, In: Zoologica Scripta. 49, 3, p. 329-339Research output: Contribution to journal › Journal article › Research › peer-review
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The population genomic legacy of the second plague pandemic
Gopalakrishnan, S., Ebenesersdóttir, S. S., Lundstrøm, I. K. C., Turner-Walker, G., Moore, K. H. S., Luisi, P., Margaryan, A., Martin, M. D., Ellegaard, M. R., Magnússon, Ó., Sigurðsson, Á., Snorradóttir, S., Magnúsdóttir, D. N., Laffoon, J. E., van Dorp, L., Liu, X., Moltke, I., Ávila-Arcos, M. C., Schraiber, J. G., Rasmussen, S. & 40 others, , 2022, In: Current Biology. 32, 21, p. 4743-4751.e6Research output: Contribution to journal › Journal article › Research › peer-review
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The wolf reference genome sequence (Canis lupus lupus) and its implications for Canis spp. population genomics
Gopalakrishnan, Shyam, Samaniego Castruita, J. A., Sinding, Mikkel Holger Strander, Kuderna, L. F. K., Räikkönen, J., Petersen, Bent, Sicheritz-Pontén, T., Larson, G., Orlando, L. A. A., Marques-Bonet, T., Hansen, Anders Johannes, Dalén, L. & Gilbert, M Thomas P, 2017, In: BMC Genomics. 18, 11 p., 495.Research output: Contribution to journal › Journal article › Research › peer-review
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Eggshell palaeogenomics: palaeognath evolutionary history revealed through ancient nuclear and mitochondrial DNA from Madagascan elephant bird (Aepyornis sp.) eggshell
Grealy, A., Phillips, M., Miller, G., Gilbert, M Thomas P, Rouillard, J., Lambert, D., Bunce, M. & Haile, J., Apr 2017, In: Molecular Phylogenetics and Evolution. 109, p. 151-163 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Dynamic evolution of the alpha (α) and beta (β) keratins has accompanied integument diversification and the adaptation of birds into novel lifestyles
Greenwold, M. J., Bao, W., Jarvis, E. D., Hu, H., Li, C., Gilbert, M Thomas P, KU, thw266 & Sawyer, R. H., 2014, In: B M C Evolutionary Biology. 14, 16 p., 249.Research output: Contribution to journal › Journal article › Research › peer-review
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Ancient DNA reveals late survival of mammoth and horse in interior Alaska
Haile, James Seymour, Froese, D. G., Macphee, R. D. E., Roberts, R. G., Arnold, L. J., Reyes, A. V., Rasmussen, M., Nielsen, Rasmus, Brook, B. W., Robinson, S., Demuro, M., Gilbert, M Thomas P, Munch, K., Austin, J. J., Cooper, A., Barnes, I., Möller, P. & Willerslev, Eske, 2009, In: Proceedings of the National Academy of Science of the United States of America. 106, 52, p. 22352-7 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Genomic diversity and differentiation between island and mainland populations of white-tailed eagles (Haliaeetus albicilla)
Hansen, C. C. R., Láruson, Á. J., Rasmussen, Jacob Agerbo, Ballesteros, J. A. C., Sinding, Mikkel Holger Strander, Hallgrimsson, G. T., von Schmalensee, M., Stefansson, R. A., Skarphédinsson, K. H., Labansen, A. L., Leivits, M., Sonne, C., Dietz, R., Skelmose, K., Boertmann, D., Eulaers, I., Martin, M. D., Helgason, A. S., Gilbert, M Thomas P & Pálsson, S., 2023, In: Molecular Ecology. 32, 8, p. 1925-1942 18 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Intestinal epigenotype of Atlantic salmon (Salmo salar) associates with tenacibaculosis and gut microbiota composition
Hansen, Søren Blikdal, Bozzi, D., Mak, Sarah Siu Tze, Clausen, C. G., Nielsen, Tue Kjærgaard, Kodama, M., Hansen, Lars Hestbjerg, Gilbert, M Thomas P & Limborg, Morten Tønsberg, 2023, In: Genomics. 115, 3, 9 p., 110629.Research output: Contribution to journal › Journal article › Research › peer-review
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Evaluating Neanderthal genetics and phylogeny.
Hebsgaard, M. B., Wiuf, C., Gilbert, M Thomas P, Glenner, Henrik & Willerslev, Eske, 2007, In: Journal of Molecular Evolution. 64, 1, p. 50-60 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
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The Farm beneath the Sand: An Archaeological Case Study on Ancient "Dirt" DNA
Hebsgaard, M. B., Gilbert, M Thomas P, Pedersen, J. A., Heyn, P., Allentoft, Morten Erik, Bunce, M., Munch, K., Schweger, C. & Willerslev, Eske, 2009, In: Antiquity. 83, p. 430-444 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
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The secrets of Sobek - A crocodile mummy mitogenome from ancient Egypt
Hekkala, E. R., Aardema, M. L., Narechania, A., Amato, G., Ikram, S., Shirley, M. H., Vliet, K. A., Cunningham, S. W., Gilbert, M Thomas P & Smith, O., 2020, In: Journal of Archaeological Science: Reports. 33, p. 1-10 10 p., 102483.Research output: Contribution to journal › Journal article › Research › peer-review
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Redefining the Evolutionary History of the Rock Dove, Columba livia, Using Whole Genome Sequences
Hernández Alonso, Germán, Ramos Madrigal, Jazmin, van Grouw, H., Ciucani, Marta Maria, Cavill, Emily Louisa, Sinding, Mikkel Holger Strander, Gopalakrishnan, Shyam, Antunes Pacheco, George & Gilbert, M Thomas P, 2023, In: Molecular Biology and Evolution. 40, 11, 17 p., msad243.Research output: Contribution to journal › Journal article › Research › peer-review
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Conservation implications of elucidating the Korean wolf taxonomic ambiguity through whole-genome sequencing
Hernández-Alonso, G., Ramos-Madrigal, J., Sun, X., Scharff-Olsen, C. H., Sinding, M. H. S., Martins, N. F., Ciucani, M. M., Mak, S. S. T., Lanigan, L. T., Clausen, C. G., Bhak, J., Jeon, S., Kim, C., Eo, K. Y., Cho, S. H., Boldgiv, B., Gantulga, G., Unudbayasgalan, Z., Kosintsev, P. A., Stenøien, H. K. & 2 others, , 2023, In: Ecology and Evolution. 13, 8, 15 p., e10404.Research output: Contribution to journal › Journal article › Research › peer-review
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A comparison of storage methods for gut microbiome studies in teleosts: insights from rainbow trout (Oncorhynchus mykiss)
Hildonen, M., Kodama, M., Puetz, Lara Christine, Gilbert, M Thomas P & Limborg, Morten Tønsberg, 2019, In: Journal of Microbiological Methods. 160, p. 42-48Research output: Contribution to journal › Journal article › Research › peer-review
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Ancient mitogenomics
Ho, S. Y. W. & Gilbert, M Thomas P, Jan 2010, In: Mitochondrion. 10, 1, p. 1-11 11 p.Research output: Contribution to journal › Review › Research › peer-review
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Improved Genome Assembly and Annotation for the Rock Pigeon (Columba livia)
Holt, C., Campbell, M., Keays, D. A., Edelman, N., Kapusta, A., Maclary, E., Domyan, E. T., Suh, A., Warren, W. C., Yandell, M., Gilbert, M Thomas P & Shapiro, M. D., 2018, In: G3: Genes, Genomes, Genetics (Bethesda). 8, 5, p. 1391-1398 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Host-derived population genomics data provides insights into bacterial and diatom composition of the killer whale skin
Hooper, R., Brealey, J. C., van der Valk, T., Alberdi, Antton, Durban, J. W., Fearnbach, H., Robertson, K. M., Baird, R. W., Bradley Hanson, M., Wade, P., Gilbert, M Thomas P, Morin, P. A., Wolf, J. B. W., Foote, A. D. & Guschanski, K., 2019, In: Molecular Ecology. 28, 2, p. 484-502 19 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Second generation sequencing and morphological faecal analysis reveal unexpected foraging behaviour by Myotis nattereri (Chiroptera, Vespertilionidae) in winter
Hope, P. R., Bohmann, Kristine, Gilbert, M Thomas P, Zepeda Mendoza, M. L., Razgour, O. & Jones, G., 2014, In: Frontiers in Zoology. 11, 15 p., 39.Research output: Contribution to journal › Journal article › Research › peer-review
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Travel Tales of a Worldwide Weed: Genomic Signatures of Plantago major L. Reveal Distinct Genotypic Groups With Links to Colonial Trade Routes
Iwanycki Ahlstrand, N., Gopalakrishnan, S., Vieira, F. G., Bieker, V. C., Meudt, H. M., Dunbar-Co, S., Rothfels, C. J., Martinez-Swatson, K. A., Maldonado, C., Hassemer, G., Shipunov, A., Bowers, M. D., Gardner, E., Xu, M., Ghorbani, A., Amano, M., Grace, O. M., Pringle, J. S., Bishop, M., Manzanilla, V. & 18 others, , 2022, In: Frontiers in Plant Science. 13, 16 p., 838166.Research output: Contribution to journal › Journal article › Research › peer-review
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Mitogenome sequencing reveals shallow evolutionary histories and recent divergence time between morphologically and ecologically distinct European whitefish (Coregonus spp.)
Jacobsen, L. M. W., Hansen, M. M., Orlando, L. A. A., Bekkevold, D., Bernatchez, L., Willerslev, Eske & Gilbert, M Thomas P, 2012, In: Molecular Ecology. 21, 11, p. 2727-2742 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Speciation and demographic history of Atlantic eels (Anguilla anguilla and A. rostrata) revealed by mitogenome sequencing
Jacobsen, M. W., Pujolar, J. M., Gilbert, M Thomas P, Moreno Mayar, J. Víctor, Bernatchez, L., Als, T. D., Lobon-Cervia, J. & Hansen, M. M., 2014, In: Heredity. 113, p. 432-442 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
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The first complete mitochondrial genome data of Hippocampus kuda originating from Malaysia
Jahari, P. N. S., Malik, N. F. A., Shamsir, M. S., Gilbert, M Thomas P & Salleh, F. M., 2020, In: Data in Brief. 31, 8 p., 105721.Research output: Contribution to journal › Journal article › Research › peer-review
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Molecular identification and phylogenetic analysis of a Callosciurus notatus complete mitogenome from Peninsular Malaysia
Jahari, P. N. S., Mohd Azman, S., Munian, K., Ahmad Ruzman, N. H., Shamsir, M. S., Richter, S. R., Gilbert, M Thomas P & Mohd Salleh, F., 2020, In: Mitochondrial DNA Part B: Resources. 5, 3, p. 3022-3024 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Phylogenomic analyses data of the avian phylogenomics project
Jarvis, E. D., Mirarab, S., Aberer, A. J., Li, B., Houde, P., Li, C., Ho, S. Y. W., Faircloth, B. C., Nabholz, B., Howard, J. T., Suh, A., Weber, C. C., Rodrigues da Fonseca, R. A., Alfaro Nuñez, L. A., Narula, N., Liu, L., Burt, D., Ellegren, H., Edwards, S. V., Stamatakis, A. & 7 others, , 2015, In: GigaScience. 4, 9 p., 4.Research output: Contribution to journal › Journal article › Research › peer-review
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Whole-genome analyses resolve early branches in the tree of life of modern birds
Jarvis, E. D., Mirarab, S., Aberer, A. J., Li, B., Houde, P., Li, C., Ho, S. Y. W., Faircloth, B. C., Nabholz, B., Howard, J. T., Suh, A., Weber, C. C., Rodrigues da Fonseca, R. A., Li, J., Zhang, F., Li, H., Zhou, L., Narula, N., Liu, L., Ganapathy, G. & 85 others, , 2014, In: Science. 346, 6215, p. 1320-1331 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Clovis age Western stemmed projectile points and human coprolites at the Paisley Caves
Jenkins, D. L., Davis, L. G., Stafford jr., T., Campos, P., Hockett, B., Jones, G. T., Cummings, L. S., Yost, C., Connolly, T. J., Yohe II, R. M., Gibbons, S. C., Raghavan, M., Rasmussen, M., Paijmans, J. L. A., Hofreiter, M., Kemp, B. M., Barta, J. L., Monroe, C., Gilbert, M Thomas P & Willerslev, Eske, 13 Jul 2012, In: Science. 337, 6091, p. 223-228 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 12980
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Reconstructing genome evolution in historic samples of the Irish potato famine pathogen
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Deep sequencing of RNA from ancient maize kernels
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True single-molecule DNA sequencing of a pleistocene horse bone
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