Standard
Comparative genomics reveals insights into avian genome evolution and adaptation. / Zhang, Guojie; Li, Cai; Li, Qiye; Li, Bo; Larkin, Denis M.; Lee, Chul; Storz, Jay F.; Antunes, Agostinho; Greenwold, Matthew J.; Meredith, Robert W.; Ödeen, Anders; Cui, Jie; Zhou, Qi; Xu, Luohao; Pan, Hailin; Wang, Zongji; Jin, Lijun; Zhang, Pei; Hu, Haofu; Yang, Wei; Hu, Jiang; Xiao, Jin; Yang, Zhikai; Liu, Yang; Xie, Qiaolin; Yu, Hao; Lian, Jinmin; Wen, Ping; Zhang, Fang; Li, Hui; Zeng, Yongli; Xiong, Zijun; Liu, Shiping; Zhou, Long; Huang, Zhiyong; An, Na; Wang, Jie; Zheng, Qiumei; Xiong, Yingqi; Wang, Guangbiao; Wang, Bo; Wang, Jingjing; Fan, Yu; Rodrigues da Fonseca, Rute Andreia; Alfaro Nuñez, Luis Alonso; Schubert, Mikkel; Orlando, Ludovic Antoine Alexandre; Mourier, Tobias; Howard, Jason T.; Ganapathy, Ganeshkumar; Pfenning, Andreas; Whitney, Osceola; Rivas, Miriam V.; Hara, Erina; Smith, Julia; Farré, Marta; Narayan, Jitendra; Slavov, Gancho; Romanov, Michael N.; Borges, Rui; MacHado, João Paulo; Khan, Imran; Springer, Mark S.; Gatesy, John; Hoffmann, Federico G.; Opazo, Juan C.; Håstad, Olle; Sawyer, Roger H.; Kim, Heebal; Kim, Kyu Won; Kim, Hyeon Jeong; Cho, Seoae; Li, Ning; Huang, Yinhua; Bruford, Michael W.; Zhan, Xiangjiang; Dixon, Andrew; Bertelsen, Mads F.; Derryberry, Elizabeth; Warren, Wesley; Wilson, Richard K.; Li, Shengbin; Ray, David A.; Green, Richard E.; O'Brien, Stephen J.; Griffin, Darren; Johnson, Warren E.; Haussler, David; Ryder, Oliver A.; Willerslev, Eske; Graves, Gary R.; Alström, Per; Fjeldså, Jon; Mindell, David P.; Edwards, Scott V.; Braun, Edward L.; Rahbek, Carsten; Burt, David W.; Houde, Peter; Zhang, Yong; Yang, Huanming; Wang, Jian; Jarvis, Erich D.; Gilbert, M Thomas P; Wang, Jun.
In:
Science, Vol. 346, No. 6215, 2014, p. 1311-1320.
Research output: Contribution to journal › Journal article › Research › peer-review
Harvard
Zhang, G, Li, C, Li, Q, Li, B, Larkin, DM, Lee, C, Storz, JF, Antunes, A, Greenwold, MJ, Meredith, RW, Ödeen, A, Cui, J, Zhou, Q, Xu, L, Pan, H, Wang, Z, Jin, L, Zhang, P, Hu, H, Yang, W, Hu, J, Xiao, J, Yang, Z, Liu, Y, Xie, Q, Yu, H, Lian, J, Wen, P, Zhang, F, Li, H, Zeng, Y, Xiong, Z, Liu, S, Zhou, L, Huang, Z, An, N, Wang, J, Zheng, Q, Xiong, Y, Wang, G, Wang, B, Wang, J, Fan, Y
, Rodrigues da Fonseca, RA, Alfaro Nuñez, LA
, Schubert, M, Orlando, LAA, Mourier, T, Howard, JT, Ganapathy, G, Pfenning, A, Whitney, O, Rivas, MV, Hara, E, Smith, J, Farré, M, Narayan, J, Slavov, G, Romanov, MN, Borges, R, MacHado, JP, Khan, I, Springer, MS, Gatesy, J, Hoffmann, FG, Opazo, JC, Håstad, O, Sawyer, RH, Kim, H, Kim, KW, Kim, HJ, Cho, S, Li, N, Huang, Y, Bruford, MW, Zhan, X, Dixon, A
, Bertelsen, MF, Derryberry, E, Warren, W, Wilson, RK, Li, S, Ray, DA, Green, RE, O'Brien, SJ, Griffin, D, Johnson, WE, Haussler, D, Ryder, OA
, Willerslev, E, Graves, GR, Alström, P
, Fjeldså, J, Mindell, DP, Edwards, SV, Braun, EL
, Rahbek, C, Burt, DW, Houde, P, Zhang, Y, Yang, H, Wang, J, Jarvis, ED
, Gilbert, MTP & Wang, J 2014, '
Comparative genomics reveals insights into avian genome evolution and adaptation',
Science, vol. 346, no. 6215, pp. 1311-1320.
https://doi.org/10.1126/science.1251385
APA
Zhang, G., Li, C., Li, Q., Li, B., Larkin, D. M., Lee, C., Storz, J. F., Antunes, A., Greenwold, M. J., Meredith, R. W., Ödeen, A., Cui, J., Zhou, Q., Xu, L., Pan, H., Wang, Z., Jin, L., Zhang, P., Hu, H., ... Wang, J. (2014).
Comparative genomics reveals insights into avian genome evolution and adaptation.
Science,
346(6215), 1311-1320.
https://doi.org/10.1126/science.1251385
Vancouver
Zhang G, Li C, Li Q, Li B, Larkin DM, Lee C et al.
Comparative genomics reveals insights into avian genome evolution and adaptation.
Science. 2014;346(6215):1311-1320.
https://doi.org/10.1126/science.1251385
Author
Zhang, Guojie ; Li, Cai ; Li, Qiye ; Li, Bo ; Larkin, Denis M. ; Lee, Chul ; Storz, Jay F. ; Antunes, Agostinho ; Greenwold, Matthew J. ; Meredith, Robert W. ; Ödeen, Anders ; Cui, Jie ; Zhou, Qi ; Xu, Luohao ; Pan, Hailin ; Wang, Zongji ; Jin, Lijun ; Zhang, Pei ; Hu, Haofu ; Yang, Wei ; Hu, Jiang ; Xiao, Jin ; Yang, Zhikai ; Liu, Yang ; Xie, Qiaolin ; Yu, Hao ; Lian, Jinmin ; Wen, Ping ; Zhang, Fang ; Li, Hui ; Zeng, Yongli ; Xiong, Zijun ; Liu, Shiping ; Zhou, Long ; Huang, Zhiyong ; An, Na ; Wang, Jie ; Zheng, Qiumei ; Xiong, Yingqi ; Wang, Guangbiao ; Wang, Bo ; Wang, Jingjing ; Fan, Yu ; Rodrigues da Fonseca, Rute Andreia ; Alfaro Nuñez, Luis Alonso ; Schubert, Mikkel ; Orlando, Ludovic Antoine Alexandre ; Mourier, Tobias ; Howard, Jason T. ; Ganapathy, Ganeshkumar ; Pfenning, Andreas ; Whitney, Osceola ; Rivas, Miriam V. ; Hara, Erina ; Smith, Julia ; Farré, Marta ; Narayan, Jitendra ; Slavov, Gancho ; Romanov, Michael N. ; Borges, Rui ; MacHado, João Paulo ; Khan, Imran ; Springer, Mark S. ; Gatesy, John ; Hoffmann, Federico G. ; Opazo, Juan C. ; Håstad, Olle ; Sawyer, Roger H. ; Kim, Heebal ; Kim, Kyu Won ; Kim, Hyeon Jeong ; Cho, Seoae ; Li, Ning ; Huang, Yinhua ; Bruford, Michael W. ; Zhan, Xiangjiang ; Dixon, Andrew ; Bertelsen, Mads F. ; Derryberry, Elizabeth ; Warren, Wesley ; Wilson, Richard K. ; Li, Shengbin ; Ray, David A. ; Green, Richard E. ; O'Brien, Stephen J. ; Griffin, Darren ; Johnson, Warren E. ; Haussler, David ; Ryder, Oliver A. ; Willerslev, Eske ; Graves, Gary R. ; Alström, Per ; Fjeldså, Jon ; Mindell, David P. ; Edwards, Scott V. ; Braun, Edward L. ; Rahbek, Carsten ; Burt, David W. ; Houde, Peter ; Zhang, Yong ; Yang, Huanming ; Wang, Jian ; Jarvis, Erich D. ; Gilbert, M Thomas P ; Wang, Jun. / Comparative genomics reveals insights into avian genome evolution and adaptation. In: Science. 2014 ; Vol. 346, No. 6215. pp. 1311-1320.
Bibtex
@article{d2ddbede21bd4b5498dff85ce99e0629,
title = "Comparative genomics reveals insights into avian genome evolution and adaptation",
abstract = "Birds are the most species-rich class of tetrapod vertebrates and have wide relevance across many research fields. We explored bird macroevolution using full genomes from 48 avian species representing all major extant clades. The avian genome is principally characterized by its constrained size, which predominantly arose because of lineage-specific erosion of repetitive elements, large segmental deletions, and gene loss. Avian genomes furthermore show a remarkably high degree of evolutionary stasis at the levels of nucleotide sequence, gene synteny, and chromosomal structure. Despite this pattern of conservation, we detected many non-neutral evolutionary changes in protein-coding genes and noncoding regions. These analyses reveal that pan-avian genomic diversity covaries with adaptations to different lifestyles and convergent evolution of traits.",
author = "Guojie Zhang and Cai Li and Qiye Li and Bo Li and Larkin, {Denis M.} and Chul Lee and Storz, {Jay F.} and Agostinho Antunes and Greenwold, {Matthew J.} and Meredith, {Robert W.} and Anders {\"O}deen and Jie Cui and Qi Zhou and Luohao Xu and Hailin Pan and Zongji Wang and Lijun Jin and Pei Zhang and Haofu Hu and Wei Yang and Jiang Hu and Jin Xiao and Zhikai Yang and Yang Liu and Qiaolin Xie and Hao Yu and Jinmin Lian and Ping Wen and Fang Zhang and Hui Li and Yongli Zeng and Zijun Xiong and Shiping Liu and Long Zhou and Zhiyong Huang and Na An and Jie Wang and Qiumei Zheng and Yingqi Xiong and Guangbiao Wang and Bo Wang and Jingjing Wang and Yu Fan and {Rodrigues da Fonseca}, {Rute Andreia} and {Alfaro Nu{\~n}ez}, {Luis Alonso} and Mikkel Schubert and Orlando, {Ludovic Antoine Alexandre} and Tobias Mourier and Howard, {Jason T.} and Ganeshkumar Ganapathy and Andreas Pfenning and Osceola Whitney and Rivas, {Miriam V.} and Erina Hara and Julia Smith and Marta Farr{\'e} and Jitendra Narayan and Gancho Slavov and Romanov, {Michael N.} and Rui Borges and MacHado, {Jo{\~a}o Paulo} and Imran Khan and Springer, {Mark S.} and John Gatesy and Hoffmann, {Federico G.} and Opazo, {Juan C.} and Olle H{\aa}stad and Sawyer, {Roger H.} and Heebal Kim and Kim, {Kyu Won} and Kim, {Hyeon Jeong} and Seoae Cho and Ning Li and Yinhua Huang and Bruford, {Michael W.} and Xiangjiang Zhan and Andrew Dixon and Bertelsen, {Mads F.} and Elizabeth Derryberry and Wesley Warren and Wilson, {Richard K.} and Shengbin Li and Ray, {David A.} and Green, {Richard E.} and O'Brien, {Stephen J.} and Darren Griffin and Johnson, {Warren E.} and David Haussler and Ryder, {Oliver A.} and Eske Willerslev and Graves, {Gary R.} and Per Alstr{\"o}m and Jon Fjelds{\aa} and Mindell, {David P.} and Edwards, {Scott V.} and Braun, {Edward L.} and Carsten Rahbek and Burt, {David W.} and Peter Houde and Yong Zhang and Huanming Yang and Jian Wang and Jarvis, {Erich D.} and Gilbert, {M Thomas P} and Jun Wang",
year = "2014",
doi = "10.1126/science.1251385",
language = "English",
volume = "346",
pages = "1311--1320",
journal = "Science",
issn = "0036-8075",
publisher = "American Association for the Advancement of Science",
number = "6215",
}
RIS
TY - JOUR
T1 - Comparative genomics reveals insights into avian genome evolution and adaptation
AU - Zhang, Guojie
AU - Li, Cai
AU - Li, Qiye
AU - Li, Bo
AU - Larkin, Denis M.
AU - Lee, Chul
AU - Storz, Jay F.
AU - Antunes, Agostinho
AU - Greenwold, Matthew J.
AU - Meredith, Robert W.
AU - Ödeen, Anders
AU - Cui, Jie
AU - Zhou, Qi
AU - Xu, Luohao
AU - Pan, Hailin
AU - Wang, Zongji
AU - Jin, Lijun
AU - Zhang, Pei
AU - Hu, Haofu
AU - Yang, Wei
AU - Hu, Jiang
AU - Xiao, Jin
AU - Yang, Zhikai
AU - Liu, Yang
AU - Xie, Qiaolin
AU - Yu, Hao
AU - Lian, Jinmin
AU - Wen, Ping
AU - Zhang, Fang
AU - Li, Hui
AU - Zeng, Yongli
AU - Xiong, Zijun
AU - Liu, Shiping
AU - Zhou, Long
AU - Huang, Zhiyong
AU - An, Na
AU - Wang, Jie
AU - Zheng, Qiumei
AU - Xiong, Yingqi
AU - Wang, Guangbiao
AU - Wang, Bo
AU - Wang, Jingjing
AU - Fan, Yu
AU - Rodrigues da Fonseca, Rute Andreia
AU - Alfaro Nuñez, Luis Alonso
AU - Schubert, Mikkel
AU - Orlando, Ludovic Antoine Alexandre
AU - Mourier, Tobias
AU - Howard, Jason T.
AU - Ganapathy, Ganeshkumar
AU - Pfenning, Andreas
AU - Whitney, Osceola
AU - Rivas, Miriam V.
AU - Hara, Erina
AU - Smith, Julia
AU - Farré, Marta
AU - Narayan, Jitendra
AU - Slavov, Gancho
AU - Romanov, Michael N.
AU - Borges, Rui
AU - MacHado, João Paulo
AU - Khan, Imran
AU - Springer, Mark S.
AU - Gatesy, John
AU - Hoffmann, Federico G.
AU - Opazo, Juan C.
AU - Håstad, Olle
AU - Sawyer, Roger H.
AU - Kim, Heebal
AU - Kim, Kyu Won
AU - Kim, Hyeon Jeong
AU - Cho, Seoae
AU - Li, Ning
AU - Huang, Yinhua
AU - Bruford, Michael W.
AU - Zhan, Xiangjiang
AU - Dixon, Andrew
AU - Bertelsen, Mads F.
AU - Derryberry, Elizabeth
AU - Warren, Wesley
AU - Wilson, Richard K.
AU - Li, Shengbin
AU - Ray, David A.
AU - Green, Richard E.
AU - O'Brien, Stephen J.
AU - Griffin, Darren
AU - Johnson, Warren E.
AU - Haussler, David
AU - Ryder, Oliver A.
AU - Willerslev, Eske
AU - Graves, Gary R.
AU - Alström, Per
AU - Fjeldså, Jon
AU - Mindell, David P.
AU - Edwards, Scott V.
AU - Braun, Edward L.
AU - Rahbek, Carsten
AU - Burt, David W.
AU - Houde, Peter
AU - Zhang, Yong
AU - Yang, Huanming
AU - Wang, Jian
AU - Jarvis, Erich D.
AU - Gilbert, M Thomas P
AU - Wang, Jun
PY - 2014
Y1 - 2014
N2 - Birds are the most species-rich class of tetrapod vertebrates and have wide relevance across many research fields. We explored bird macroevolution using full genomes from 48 avian species representing all major extant clades. The avian genome is principally characterized by its constrained size, which predominantly arose because of lineage-specific erosion of repetitive elements, large segmental deletions, and gene loss. Avian genomes furthermore show a remarkably high degree of evolutionary stasis at the levels of nucleotide sequence, gene synteny, and chromosomal structure. Despite this pattern of conservation, we detected many non-neutral evolutionary changes in protein-coding genes and noncoding regions. These analyses reveal that pan-avian genomic diversity covaries with adaptations to different lifestyles and convergent evolution of traits.
AB - Birds are the most species-rich class of tetrapod vertebrates and have wide relevance across many research fields. We explored bird macroevolution using full genomes from 48 avian species representing all major extant clades. The avian genome is principally characterized by its constrained size, which predominantly arose because of lineage-specific erosion of repetitive elements, large segmental deletions, and gene loss. Avian genomes furthermore show a remarkably high degree of evolutionary stasis at the levels of nucleotide sequence, gene synteny, and chromosomal structure. Despite this pattern of conservation, we detected many non-neutral evolutionary changes in protein-coding genes and noncoding regions. These analyses reveal that pan-avian genomic diversity covaries with adaptations to different lifestyles and convergent evolution of traits.
U2 - 10.1126/science.1251385
DO - 10.1126/science.1251385
M3 - Journal article
AN - SCOPUS:84917678595
VL - 346
SP - 1311
EP - 1320
JO - Science
JF - Science
SN - 0036-8075
IS - 6215
ER -
