FrAnTK: a Frequency-based Analysis ToolKit for efficient exploration of allele sharing patterns in present-day and ancient genomic datasets

Research output: Contribution to journal › Journal article › Research › peer-review

Standard

FrAnTK : a Frequency-based Analysis ToolKit for efficient exploration of allele sharing patterns in present-day and ancient genomic datasets. / Moreno-Mayar, J. Víctor.

In: G3: Genes, Genomes, Genetics, Vol. 12, No. 1, jkab357, 2022.

Research output: Contribution to journal › Journal article › Research › peer-review

Harvard

Moreno-Mayar, JV 2022, 'FrAnTK: a Frequency-based Analysis ToolKit for efficient exploration of allele sharing patterns in present-day and ancient genomic datasets', G3: Genes, Genomes, Genetics, vol. 12, no. 1, jkab357. https://doi.org/10.1093/g3journal/jkab357

APA

Moreno-Mayar, J. V. (2022). FrAnTK: a Frequency-based Analysis ToolKit for efficient exploration of allele sharing patterns in present-day and ancient genomic datasets. G3: Genes, Genomes, Genetics, 12(1), [jkab357]. https://doi.org/10.1093/g3journal/jkab357

Vancouver

Moreno-Mayar JV. FrAnTK: a Frequency-based Analysis ToolKit for efficient exploration of allele sharing patterns in present-day and ancient genomic datasets. G3: Genes, Genomes, Genetics. 2022;12(1). jkab357. https://doi.org/10.1093/g3journal/jkab357

Author

Moreno-Mayar, J. Víctor. / FrAnTK : a Frequency-based Analysis ToolKit for efficient exploration of allele sharing patterns in present-day and ancient genomic datasets. In: G3: Genes, Genomes, Genetics. 2022 ; Vol. 12, No. 1.

Bibtex

@article{a84210c1f32e4dfd97230827b4cc9a75,
title = "FrAnTK: a Frequency-based Analysis ToolKit for efficient exploration of allele sharing patterns in present-day and ancient genomic datasets",
abstract = "Present-day and ancient population genomic studies from different study organisms have rapidly become accessible to diverse research groups worldwide. Unfortunately, as datasets and analyses become more complex, researchers with less computational experience often miss their chance to analyze their own data. We introduce FrAnTK, a user-friendly toolkit for computation and visualization of allele frequency-based statistics in ancient and present-day genome variation datasets. We provide fast, memory-efficient tools that allow the user to go from sequencing data to complex exploratory analyses and visual representations with minimal data manipulation. Its simple usage and low computational requirements make FrAnTK ideal for users that are less familiar with computer programming carrying out large-scale population studies.",
keywords = "population genomics, allele sharing statistics, user-friendly pipeline, ancient DNA, python, R, perl, SEQUENCE, ANCESTRY, POPULATIONS",
author = "Moreno-Mayar, {J. V{\'i}ctor}",
year = "2022",
doi = "10.1093/g3journal/jkab357",
language = "English",
volume = "12",
journal = "G3: Genes, Genomes, Genetics (Bethesda)",
issn = "2160-1836",
publisher = "Genetics Society of America",
number = "1",

}

RIS

TY - JOUR

T1 - FrAnTK

T2 - a Frequency-based Analysis ToolKit for efficient exploration of allele sharing patterns in present-day and ancient genomic datasets

AU - Moreno-Mayar, J. Víctor

PY - 2022

Y1 - 2022

N2 - Present-day and ancient population genomic studies from different study organisms have rapidly become accessible to diverse research groups worldwide. Unfortunately, as datasets and analyses become more complex, researchers with less computational experience often miss their chance to analyze their own data. We introduce FrAnTK, a user-friendly toolkit for computation and visualization of allele frequency-based statistics in ancient and present-day genome variation datasets. We provide fast, memory-efficient tools that allow the user to go from sequencing data to complex exploratory analyses and visual representations with minimal data manipulation. Its simple usage and low computational requirements make FrAnTK ideal for users that are less familiar with computer programming carrying out large-scale population studies.

AB - Present-day and ancient population genomic studies from different study organisms have rapidly become accessible to diverse research groups worldwide. Unfortunately, as datasets and analyses become more complex, researchers with less computational experience often miss their chance to analyze their own data. We introduce FrAnTK, a user-friendly toolkit for computation and visualization of allele frequency-based statistics in ancient and present-day genome variation datasets. We provide fast, memory-efficient tools that allow the user to go from sequencing data to complex exploratory analyses and visual representations with minimal data manipulation. Its simple usage and low computational requirements make FrAnTK ideal for users that are less familiar with computer programming carrying out large-scale population studies.

KW - population genomics

KW - allele sharing statistics

KW - user-friendly pipeline

KW - ancient DNA

KW - python

KW - R

KW - perl

KW - SEQUENCE

KW - ANCESTRY

KW - POPULATIONS

U2 - 10.1093/g3journal/jkab357

DO - 10.1093/g3journal/jkab357

M3 - Journal article

C2 - 34791203

VL - 12

JO - G3: Genes, Genomes, Genetics (Bethesda)

JF - G3: Genes, Genomes, Genetics (Bethesda)

SN - 2160-1836

IS - 1

M1 - jkab357

ER -

ID: 291295967