Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean

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Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean. / Delmont, Tom O.; Gaia, Morgan; Hinsinger, Damien D.; Frémont, Paul; Vanni, Chiara; Fernandez-Guerra, Antonio; Eren, A. Murat; Kourlaiev, Artem; d'Agata, Leo; Clayssen, Quentin; Villar, Emilie; Labadie, Karine; Cruaud, Corinne; Poulain, Julie; Da Silva, Corinne; Wessner, Marc; Noel, Benjamin; Aury, Jean-Marc; Sunagawa, Shinichi; Acinas, Silvia G.; Bork, Peer; Karsenti, Eric; Bowler, Chris; Sardet, Christian; Stemmann, Lars; de Vargas, Colomban; Wincker, Patrick; Lescot, Magali; Babin, Marcel; Gorsky, Gabriel; Grimsley, Nigel; Guidi, Lionel; Hingamp, Pascal; Jaillon, Olivier; Kandels, Stefanie; Iudicone, Daniele; Ogata, Hiroyuki; Pesant, Stéphane; Sullivan, Matthew B.; Not, Fabrice; Lee, Karp Boss; Boss, Emmanuel; Cochrane, Guy; Follows, Michael; Poulton, Nicole; Raes, Jeroen; Sieracki, Mike; Speich, Sabrina; Pelletier, Eric; Tara Oceans Coordinators.

In: Cell Genomics, Vol. 2, No. 5, 100123, 2022.

Research output: Contribution to journal › Journal article › Research › peer-review

Harvard

Delmont, TO, Gaia, M, Hinsinger, DD, Frémont, P, Vanni, C, Fernandez-Guerra, A, Eren, AM, Kourlaiev, A, d'Agata, L, Clayssen, Q, Villar, E, Labadie, K, Cruaud, C, Poulain, J, Da Silva, C, Wessner, M, Noel, B, Aury, J-M, Sunagawa, S, Acinas, SG, Bork, P, Karsenti, E, Bowler, C, Sardet, C, Stemmann, L, de Vargas, C, Wincker, P, Lescot, M, Babin, M, Gorsky, G, Grimsley, N, Guidi, L, Hingamp, P, Jaillon, O, Kandels, S, Iudicone, D, Ogata, H, Pesant, S, Sullivan, MB, Not, F, Lee, KB, Boss, E, Cochrane, G, Follows, M, Poulton, N, Raes, J, Sieracki, M, Speich, S, Pelletier, E & Tara Oceans Coordinators 2022, 'Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean', Cell Genomics, vol. 2, no. 5, 100123. https://doi.org/10.1016/j.xgen.2022.100123

APA

Delmont, T. O., Gaia, M., Hinsinger, D. D., Frémont, P., Vanni, C., Fernandez-Guerra, A., Eren, A. M., Kourlaiev, A., d'Agata, L., Clayssen, Q., Villar, E., Labadie, K., Cruaud, C., Poulain, J., Da Silva, C., Wessner, M., Noel, B., Aury, J-M., Sunagawa, S., ... Tara Oceans Coordinators (2022). Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean. Cell Genomics, 2(5), [100123]. https://doi.org/10.1016/j.xgen.2022.100123

Vancouver

Delmont TO, Gaia M, Hinsinger DD, Frémont P, Vanni C, Fernandez-Guerra A et al. Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean. Cell Genomics. 2022;2(5). 100123. https://doi.org/10.1016/j.xgen.2022.100123

Author

Delmont, Tom O. ; Gaia, Morgan ; Hinsinger, Damien D. ; Frémont, Paul ; Vanni, Chiara ; Fernandez-Guerra, Antonio ; Eren, A. Murat ; Kourlaiev, Artem ; d'Agata, Leo ; Clayssen, Quentin ; Villar, Emilie ; Labadie, Karine ; Cruaud, Corinne ; Poulain, Julie ; Da Silva, Corinne ; Wessner, Marc ; Noel, Benjamin ; Aury, Jean-Marc ; Sunagawa, Shinichi ; Acinas, Silvia G. ; Bork, Peer ; Karsenti, Eric ; Bowler, Chris ; Sardet, Christian ; Stemmann, Lars ; de Vargas, Colomban ; Wincker, Patrick ; Lescot, Magali ; Babin, Marcel ; Gorsky, Gabriel ; Grimsley, Nigel ; Guidi, Lionel ; Hingamp, Pascal ; Jaillon, Olivier ; Kandels, Stefanie ; Iudicone, Daniele ; Ogata, Hiroyuki ; Pesant, Stéphane ; Sullivan, Matthew B. ; Not, Fabrice ; Lee, Karp Boss ; Boss, Emmanuel ; Cochrane, Guy ; Follows, Michael ; Poulton, Nicole ; Raes, Jeroen ; Sieracki, Mike ; Speich, Sabrina ; Pelletier, Eric ; Tara Oceans Coordinators. / Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean. In: Cell Genomics. 2022 ; Vol. 2, No. 5.

Bibtex

@article{e81e3436e74d47e181ebfbe610b6d00e,

title = "Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean",

abstract = "Marine planktonic eukaryotes play critical roles in global biogeochemical cycles and climate. However, their poor representation in culture collections limits our understanding of the evolutionary history and genomic underpinnings of planktonic ecosystems. Here, we used 280 billion Tara Oceans metagenomic reads from polar, temperate, and tropical sunlit oceans to reconstruct and manually curate more than 700 abundant and widespread eukaryotic environmental genomes ranging from 10 Mbp to 1.3 Gbp. This genomic resource covers a wide range of poorly characterized eukaryotic lineages that complement long-standing contributions from culture collections while better representing plankton in the upper layer of the oceans. We performed the first, to our knowledge, comprehensive genome-wide functional classification of abundant unicellular eukaryotic plankton, revealing four major groups connecting distantly related lineages. Neither trophic modes of plankton nor its vertical evolutionary history could completely explain the functional repertoire convergence of major eukaryotic lineages that coexisted within oceanic currents for millions of years.",

keywords = "anvi'o, ecology, evolution, functions, genomics, metagenomics, Planktonic eukaryotes, Tara Oceans",

author = "Delmont, {Tom O.} and Morgan Gaia and Hinsinger, {Damien D.} and Paul Fr{\'e}mont and Chiara Vanni and Antonio Fernandez-Guerra and Eren, {A. Murat} and Artem Kourlaiev and Leo d'Agata and Quentin Clayssen and Emilie Villar and Karine Labadie and Corinne Cruaud and Julie Poulain and {Da Silva}, Corinne and Marc Wessner and Benjamin Noel and Jean-Marc Aury and Shinichi Sunagawa and Acinas, {Silvia G.} and Peer Bork and Eric Karsenti and Chris Bowler and Christian Sardet and Lars Stemmann and {de Vargas}, Colomban and Patrick Wincker and Magali Lescot and Marcel Babin and Gabriel Gorsky and Nigel Grimsley and Lionel Guidi and Pascal Hingamp and Olivier Jaillon and Stefanie Kandels and Daniele Iudicone and Hiroyuki Ogata and St{\'e}phane Pesant and Sullivan, {Matthew B.} and Fabrice Not and Lee, {Karp Boss} and Emmanuel Boss and Guy Cochrane and Michael Follows and Nicole Poulton and Jeroen Raes and Mike Sieracki and Sabrina Speich and Eric Pelletier and {Tara Oceans Coordinators}",

note = "Publisher Copyright: {\textcopyright} 2022 The Author(s)",

year = "2022",

doi = "10.1016/j.xgen.2022.100123",

language = "English",

volume = "2",

journal = "Cell Genomics",

issn = "2666-979x",

publisher = "Elsevier",

number = "5",

}

RIS

TY - JOUR

T1 - Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean

AU - Delmont, Tom O.

AU - Gaia, Morgan

AU - Hinsinger, Damien D.

AU - Frémont, Paul

AU - Vanni, Chiara

AU - Fernandez-Guerra, Antonio

AU - Eren, A. Murat

AU - Kourlaiev, Artem

AU - d'Agata, Leo

AU - Clayssen, Quentin

AU - Villar, Emilie

AU - Labadie, Karine

AU - Cruaud, Corinne

AU - Poulain, Julie

AU - Da Silva, Corinne

AU - Wessner, Marc

AU - Noel, Benjamin

AU - Aury, Jean-Marc

AU - Sunagawa, Shinichi

AU - Acinas, Silvia G.

AU - Bork, Peer

AU - Karsenti, Eric

AU - Bowler, Chris

AU - Sardet, Christian

AU - Stemmann, Lars

AU - de Vargas, Colomban

AU - Wincker, Patrick

AU - Lescot, Magali

AU - Babin, Marcel

AU - Gorsky, Gabriel

AU - Grimsley, Nigel

AU - Guidi, Lionel

AU - Hingamp, Pascal

AU - Jaillon, Olivier

AU - Kandels, Stefanie

AU - Iudicone, Daniele

AU - Ogata, Hiroyuki

AU - Pesant, Stéphane

AU - Sullivan, Matthew B.

AU - Not, Fabrice

AU - Lee, Karp Boss

AU - Boss, Emmanuel

AU - Cochrane, Guy

AU - Follows, Michael

AU - Poulton, Nicole

AU - Raes, Jeroen

AU - Sieracki, Mike

AU - Speich, Sabrina

AU - Pelletier, Eric

AU - Tara Oceans Coordinators

PY - 2022

Y1 - 2022

N2 - Marine planktonic eukaryotes play critical roles in global biogeochemical cycles and climate. However, their poor representation in culture collections limits our understanding of the evolutionary history and genomic underpinnings of planktonic ecosystems. Here, we used 280 billion Tara Oceans metagenomic reads from polar, temperate, and tropical sunlit oceans to reconstruct and manually curate more than 700 abundant and widespread eukaryotic environmental genomes ranging from 10 Mbp to 1.3 Gbp. This genomic resource covers a wide range of poorly characterized eukaryotic lineages that complement long-standing contributions from culture collections while better representing plankton in the upper layer of the oceans. We performed the first, to our knowledge, comprehensive genome-wide functional classification of abundant unicellular eukaryotic plankton, revealing four major groups connecting distantly related lineages. Neither trophic modes of plankton nor its vertical evolutionary history could completely explain the functional repertoire convergence of major eukaryotic lineages that coexisted within oceanic currents for millions of years.

AB - Marine planktonic eukaryotes play critical roles in global biogeochemical cycles and climate. However, their poor representation in culture collections limits our understanding of the evolutionary history and genomic underpinnings of planktonic ecosystems. Here, we used 280 billion Tara Oceans metagenomic reads from polar, temperate, and tropical sunlit oceans to reconstruct and manually curate more than 700 abundant and widespread eukaryotic environmental genomes ranging from 10 Mbp to 1.3 Gbp. This genomic resource covers a wide range of poorly characterized eukaryotic lineages that complement long-standing contributions from culture collections while better representing plankton in the upper layer of the oceans. We performed the first, to our knowledge, comprehensive genome-wide functional classification of abundant unicellular eukaryotic plankton, revealing four major groups connecting distantly related lineages. Neither trophic modes of plankton nor its vertical evolutionary history could completely explain the functional repertoire convergence of major eukaryotic lineages that coexisted within oceanic currents for millions of years.

KW - anvi'o

KW - ecology

KW - evolution

KW - functions

KW - genomics

KW - metagenomics

KW - Planktonic eukaryotes

KW - Tara Oceans

U2 - 10.1016/j.xgen.2022.100123

DO - 10.1016/j.xgen.2022.100123

M3 - Journal article

C2 - 36778897

AN - SCOPUS:85131102051

VL - 2

JO - Cell Genomics

JF - Cell Genomics

SN - 2666-979x

IS - 5

M1 - 100123

ER -

ID: 340844175

Globe Institute