Antton Alberdi Estibaritz

Antton Alberdi Estibaritz

Associate Professor

ORCID: 0000-0002-2875-6446

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  1. Published

    Plecotus macrobullaris (Chiroptera: Vespertilionidae)

    Alberdi, Antton & Aizpurua Arrieta, Ostaizka, 2018, In: Mammalian Species. 50, 958, p. 26-33

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    A comparison of short-read, HiFi long-read, and hybrid strategies for genome-resolved metagenomics

    Eisenhofer Philipona, Raphael A, Nesme, J., Santos-Bay, Luisa, Koziol, Adam Leslie, Sørensen, Søren Johannes, Alberdi, Antton & Aizpurua Arrieta, Ostaizka, 2024, In: Microbiology Spectrum. 12, 4, 14 p., e03590-23.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    A guide to the application of Hill numbers to DNA-based diversity analyses

    Alberdi, Antton & Gilbert, M Thomas P, 2019, In: Molecular Ecology Resources. 19, 4, p. 804-817 14 p.

    Research output: Contribution to journal › Review › Research › peer-review

  4. Published

    A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants

    Rice, E. S., Alberdi, A., Alfieri, J., Athrey, G., Balacco, J. R., Bardou, P., Blackmon, H., Charles, M., Cheng, H. H., Fedrigo, O., Fiddaman, S. R., Formenti, G., Frantz, L. A. F., Gilbert, M. T. P., Hearn, C. J., Jarvis, E. D., Klopp, C., Marcos, S., Mason, A. S., Velez-Irizarry, D. & 2 others, Xu, L. & Warren, W. C., 2023, In: BMC Biology. 21, 17 p., 267.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    A simplified protocol for DNA extraction from FTA cards for faecal microbiome studies

    Botnen, A. B., Bjørnsen, Mads Bjørn, Alberdi, Antton, Gilbert, M Thomas P & Aizpurua Arrieta, Ostaizka, 2023, In: Heliyon. 9, 1, 10 p., e12861.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    A species-level trait dataset of bats in Europe and beyond

    Froidevaux, J. S. P., Toshkova, N., Barbaro, L., Benítez-López, A., Kerbiriou, C., Le Viol, I., Pacifici, M., Santini, L., Stawski, C., Russo, D., Dekker, J., Alberdi, A., Amorim, F., Ancillotto, L., Barré, K., Bas, Y., Cantú-Salazar, L., Dechmann, D. K. N., Devaux, T., Eldegard, K. & 28 others, Fereidouni, S., Furmankiewicz, J., Hamidovic, D., Hill, D. L., Ibáñez, C., Julien, J. F., Juste, J., Kaňuch, P., Korine, C., Laforge, A., Legras, G., Leroux, C., Lesiński, G., Mariton, L., Marmet, J., Mata, V. A., Mifsud, C. M., Nistreanu, V., Novella-Fernandez, R., Rebelo, H., Roche, N., Roemer, C., Ruczyński, I., Sørås, R., Uhrin, M., Vella, A., Voigt, C. C. & Razgour, O., 2023, In: Scientific Data. 10, 13 p., 253.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Agriculture shapes the trophic niche of a bat preying on multiple pest arthropods across Europe: Evidence from DNA metabarcoding

    Aizpurua Arrieta, Ostaizka, Budinski, I., Georgiakakis, P., Gopalakrishnan, Shyam, Ibanez, C., Mata, V., Rebelo, H., Russo, D., Szodoray-Paradi, F., Zhelyazkova, V., Zrncic, V., Gilbert, M Thomas P & Alberdi, Antton, 2018, In: Molecular Ecology. 27, 3, p. 815-825 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    An integrated framework to identify wildlife populations under threat from climate change

    Razgour, O., Taggart, J. B., Manel, S., Juste, J., Ibanez, C., Rebelo, H., Alberdi, Antton, Jones, G. & Park, K., 2018, In: Molecular Ecology Resources. 18, 1, p. 18-31 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Applied Hologenomics: Feasibility and Potential in Aquaculture

    Limborg, Morten Tønsberg, Alberdi, Antton, Kodama, M., Roggenbuck, M., Kristiansen, Karsten & Gilbert, M Thomas P, 2018, In: Trends in Biotechnology. 36, 3, p. 252-264 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Assessing niche partitioning of co-occurring sibling bat species by DNA metabarcoding

    Arrizabalaga-Escudero, A., Clare, E. L., Salsamendi, E., Alberdi, Antton, Garin, I., Aihartza, J. & Goiti, U., 2018, In: Molecular Ecology. 27, 5, p. 1273-1283 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Bacterial topography of the upper and lower respiratory tract in pigs

    Pirolo, Mattia, Espinosa-Gongora, C., Alberdi, Antton, Eisenhofer Philipona, Raphael A, Soverini, M., Eriksen, E. Ø., Pedersen, Ken Steen & Guardabassi, Luca, 2023, In: BMC Animal Microbiome. 5, 13 p., 5.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Bat diversity boosts ecosystem services: Evidence from pine processionary moth predation

    Augusto, A. M., Raposeira, H., Horta, P., Mata, V. A., Aizpurua Arrieta, Ostaizka, Alberdi, Antton, Jones, G., Razgour, O., Santos, S. A. P., Russo, D. & Rebelo, H., 2024, In: Science of the Total Environment. 912, 10 p., 169387.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Broad-scale patterns of geographic avoidance between species emerge in the absence of fine-scale mechanisms of coexistence

    Novella-Fernandez, R., Juste, J., Ibáñez, C., Rebelo, H., Russo, D., Alberdi, Antton, Kiefer, A., Graham, L., Paul, H., Doncaster, C. P. & Razgour, O., 2021, In: Diversity and Distributions. 27, 9, p. 1606-1618 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Can pinewoods provide habitat for a deciduous forest specialist? a two-scale approach to the habitat selection of Bechstein's bat

    Arrizabalaga-Escudero, A., Napal, M., Aihartza, J., Garin, I., Alberdi, Antton & Salsamendi, E., 2014, In: Mammalian Biology. 79, 2, p. 117-122 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Comparative Microbiome Analysis Reveals the Ecological Relationships Between Rumen Methanogens, Acetogens, and Their Hosts

    Li, Z., Wang, X., Alberdi, Antton, Deng, J., Zhong, Z., Si, H., Zheng, C., Zhou, H., Wang, J., Yang, Y., Wright, A. D. G., Mao, S., Zhang, Z., Guan, L. & Li, G., 2020, In: Frontiers in Microbiology. 11, 14 p., 1311.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Considering adaptive genetic variation in climate change vulnerability assessment reduces species range loss projections

    Razgour, O., Forester, B., Taggart, J. B., Bekaert, M., Juste, J., Ibáñez, C., Puechmaille, S. J., Novella-Fernandez, R., Alberdi, Antton & Manel, S., 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 21, p. 10418-10423 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    DNA metabarcoding and spatial modelling link diet diversification with distribution homogeneity in European bats

    Alberdi, Antton, Razgour, O., Aizpurua Arrieta, Ostaizka, Novella-Fernandez, R., Aihartza, J., Budinski, I., Garin, I., Ibanez, C., Izagirre, E., Rebelo, H., Russo, D., Vlaschenko, A., Zhelyazkova, V., Zrncic, V. & Gilbert, M Thomas P, 2020, In: Nature Communications. 11, 8 p., 1154.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    DNA metabarcoding reveals seasonal changes in diet composition across four arthropod-eating lizard species (Phrynosomatidae: Sceloporus)

    Hernández, M., Hereira-Pacheco, S., Alberdi, Antton, De La Vega-Pérez, A. H. D., Estrada-Torres, A., Ancona, S. & Navarro-Noya, Y. E., 2024, In: Integrative Zoology. 19, 3, p. 480-495 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Disentangling host–microbiota complexity through hologenomics

    Alberdi, Antton, Andersen, Sandra Breum, Limborg, Morten Tønsberg, Dunn, Rob & Gilbert, M Thomas P, 2022, In: Nature Reviews Genetics. 23, 5, p. 281-297 17 p.

    Research output: Contribution to journal › Review › Research › peer-review

  20. Published

    Diversity and compositional changes in the gut microbiota of wild and captive vertebrates: a meta-analysis

    Alberdi, Antton, Martin Bideguren, Garazi & Aizpurua Arrieta, Ostaizka, 2021, In: Scientific Reports. 11, 10 p., 22660.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Do vertebrate gut metagenomes confer rapid ecological adaptation?

    Alberdi, Antton, Aizpurua Arrieta, Ostaizka, Bohmann, Kristine, Zepeda Mendoza, M. L. & Gilbert, M Thomas P, Sep 2016, In: Trends in Ecology & Evolution. 31, 9, p. 689-699 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Ecology and evolutionary biology of fishing bats

    Aizpurua Arrieta, Ostaizka & Alberdi, Antton, 2018, In: Mammal Review. 48, 4, p. 284-297

    Research output: Contribution to journal › Review › Research › peer-review

  23. Published

    Enriching captivity conditions with natural elements does not prevent the loss of wild-like gut microbiota but shapes its compositional variation in two small mammals

    Koziol, Adam Leslie, Larrañaga, Iñaki Odriozola, Jessen, Lasse Nyholm, Leonard, Aoife Mary, San Jose, C., Pauperio, J., Ferreira, C., Hansen, Anders Johannes, Aizpurua Arrieta, Ostaizka, Gilbert, M Thomas P & Alberdi, Antton, 2022, In: MicrobiologyOpen. 11, 5, 19 p., e1318.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. E-pub ahead of print

    Field and laboratory guidelines for reliable bioinformatic and statistical analysis of bacterial shotgun metagenomic data

    Aizpurua Arrieta, Ostaizka, Dunn, Rob, Hansen, Lars Hestbjerg, Gilbert, M Thomas P & Alberdi, Antton, 2024, (E-pub ahead of print) In: Critical Reviews in Biotechnology.

    Research output: Contribution to journal › Review › Research › peer-review

  25. Published

    Fine-tuned echolocation and capture-flight of Myotis capaccinii when facing different-sized insect and fish prey

    Aizpurua, O., Aihartza, J., Alberdi, Antton, Baagøe, Hans J. & Garin, I., 2014, In: Journal of Experimental Biology. 217, 18, p. 3318-3325 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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ID: 152300361