Tom Gilbert

Tom Gilbert

Professor

Member of:

    ORCID: 0000-0002-5805-7195

    Publication year:
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    126 - 150 out of 443Page size: 25
    1. 2020
    2. Published

      Adaptive venom evolution and toxicity in octopods is driven by extensive novel gene formation, expansion, and loss

      Whitelaw, B. L., Cooke, I. R., Finn, J., Rodrigues da Fonseca, Rute Andreia, Ritschard, E. A., Gilbert, M Thomas P, Simakov, O. & Strugnell, J. M., 2020, In: GigaScience. 9, 11, 15 p., giaa120.

      Research output: Contribution to journal › Journal article › Research › peer-review

    3. Published

      A draft genome sequence of the elusive giant squid, Architeuthis dux

      da Fonseca, R. R., Couto, A., Machado, A. M., Brejova, B., Albertin, C. B., Silva, F., Gardner, P., Baril, T., Hayward, A., Campos, A., Ribeiro, Â. M., Barrio-Hernandez, I., Hoving, H-J., Tafur-Jimenez, R., Chu, C., Frazão, B., Petersen, B., Peñaloza, F., Musacchia, F., Alexander, G. C. & 24 others, Osório, H., Winkelmann, I., Simakov, O., Rasmussen, Simon, Rahman, M. Z., Pisani, D., Vinther, J., Jarvis, E., KU, thw266, Strugnell, J. M., Castro, L. F. C., Fedrigo, O., Patricio, M., Li, Q., Rocha, S., Antunes, A., Wu, Y., Ma, B., Sanges, R., Vinar, T., Blagoev, B., Sicheritz-Pontén, Thomas, Nielsen, Rasmus & Gilbert, M Thomas P, 2020, In: GigaScience. 9, 1, 12 p., giz152.

      Research output: Contribution to journal › Journal article › Research › peer-review

    4. Published

      The evolutionary history of extinct and living lions

      de Manuel, M., Barnett, R., Sandoval-Velasco, M., Yamaguchi, N., Vieira, F. G., Mendoza, M. L. Z., Liu, S., Martin, M. D., Sinding, M-H. S., Mak, S. S. T., Caroe, C., Liu, S., Guo, C., Zheng, J., Zazula, G., Baryshnikov, G., Eizirik, E., Koepfli, K-P., Johnson, W. E., Antunes, A. & 9 others, Sicheritz-Pontén, Thomas, Gopalakrishnan, Shyam, Larson, G., Yang, H., O'Brien, S. J., Hansen, Anders Johannes, KU, thw266, Marques-Bonet, T. & Gilbert, M Thomas P, 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 20, p. 10927-10934 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    5. Published

      Plasmodium vivax Malaria Viewed through the Lens of an Eradicated European Strain

      van Dorp, L., Gelabert, P., Rieux, A., de Manuel, M., de-Dios, T., Gopalakrishnan, Shyam, Caroe, C., Sandoval-Velasco, Marcela, Fregel, R., Olalde, I., Escosa, R., Aranda, C., Huijben, S., Mueller, I., Marques-Bonet, T., Balloux, F., Gilbert, M Thomas P & Lalueza-Fox, C., 2020, In: MOLECULAR BIOLOGY AND EVOLUTION . 37, 3, p. 773-785 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    6. 2019
    7. Published

      A guide to the application of Hill numbers to DNA-based diversity analyses

      Alberdi, Antton & Gilbert, M Thomas P, 2019, In: Molecular Ecology Resources. 19, 4, p. 804-817 14 p.

      Research output: Contribution to journal › Review › Research › peer-review

    8. Published

      Promises and pitfalls of using high-throughput sequencing for diet analysis

      Alberdi, Antton, Aizpurua Arrieta, Ostaizka, Bohmann, Kristine, Gopalakrishnan, Shyam, Lynggaard, Christina Islas, Nielsen, M. & Gilbert, M Thomas P, Mar 2019, In: Molecular Ecology Resources. 19, 2, p. 327-348

      Research output: Contribution to journal › Review › Research › peer-review

    9. Published

      Parallel adaptation of rabbit populations to myxoma virus

      Alves, J. M., Carneiro, M., Cheng, J. Y., Matos, A. L. D., Rahman, M. M., Loog, L., Campos, P. F., Wales, N., Eriksson, A., Manica, A., Strive, T., Graham, S. C., Afonso, S., Bell, D. J., Belmont, L., Day, J. P., Fuller, S. J., Marchandeau, S., Palmer, W. J., Queney, G. & 8 others, Surridge, A. K., Vieira, Filipe Garrett, McFadden, G., Nielsen, Rasmus, Gilbert, M Thomas P, Esteves, P. J., Ferrand, N. & Jiggins, F. M., 2019, In: Science. 363, 6433

      Research output: Contribution to journal › Journal article › Research › peer-review

    10. Published

      Specialized sledge dogs accompanied Inuit dispersal across the North American Arctic

      Ameen, C., Feuerborn, T. R., Brown, S. K., Linderholm, A., Hulme-Beaman, A., Lebrasseur, O., Sinding, M-H. S., Lounsberry, Z. T., Lin, A. T., Appelt, M., Bachmann, L., Betts, M., Britton, K., Darwent, J., Dietz, R., Fredholm, M., Gopalakrishnan, S., Goriunova, O. I., Grønnow, B., Haile, J. & 39 others, Hallsson, J. H., Harrison, R., Heide-Jørgensen, M. P., Knecht, R., Losey, R. J., Masson-MacLean, E., McGovern, T. H., McManus-Fry, E., Meldgaard, Morten, Midtdal, Å., Moss, M. L., Nikitin, I. G., Nomokonova, T., Pálsdóttir, A. H., Perri, A., Popov, A. N., Rankin, L., Reuther, J. D., Sablin, M., Schmidt, A. L., Shirar, S., Smiarowski, K., Sonne, C., Stiner, M. C., Vasyukov, M., West, C. F., Ween, G. B., Wennerberg, S. E., Wiig, Ø., Woollett, J., Dalén, L., Hansen, Anders Johannes, Gilbert, M Thomas P, Sacks, B. N., Frantz, L., Larson, G., Dobney, K., Darwent, C. M. & Evin, A., 2019, In: Proceedings. Biological sciences. 286, 1916, p. 20191929

      Research output: Contribution to journal › Journal article › Research › peer-review

    11. Published

      Avian Binocularity and Adaptation to Nocturnal Environments: Genomic Insights from a Highly Derived Visual Phenotype

      Borges, R., Fonseca, J., Gomes, C., Johnson, W. E., O'Brien, S. J., KU, thw266, Gilbert, M Thomas P, Jarvis, E. D. & Antunes, A., 2019, In: Genome Biology and Evolution. 11, 8, p. 2244-2255

      Research output: Contribution to journal › Journal article › Research › peer-review

    12. Published

      DNA extraction from keratin and chitin

      Campos, P. F. & Gilbert, M Thomas P, 1 Jan 2019, Methods in Molecular Biology. Humana Press, p. 57-63 7 p. (Methods in Molecular Biology, Vol. 1963).

      Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

    13. Published

      Early Pleistocene enamel proteome from Dmanisi resolves Stephanorhinus phylogeny

      Cappellini, E., Welker, F., Pandolfi, L., Ramos-Madrigal, J., Samodova, D., Rüther, P. L., Fotakis, A. K., Lyon, D., Moreno-Mayar, J. V., Bukhsianidze, M., Rakownikow Jersie-Christensen, R., Mackie, M., Ginolhac, A., Ferring, R., Tappen, M., Palkopoulou, E., Dickinson, M. R., Stafford, T. W., Chan, Y. L., Götherström, A. & 23 others, Nathan, S. K. S. S., Heintzman, P. D., Kapp, J. D., Kirillova, I., Moodley, Y., Agusti, J., Kahlke, R. D., Kiladze, G., Martínez-Navarro, B., Liu, Shanlin, Sandoval-Velasco, Marcela, Sinding, Mikkel Holger Strander, Kelstrup, C. D., Allentoft, Morten Erik, Orlando, L., Penkman, K., Shapiro, B., Rook, L., Dalén, L., Gilbert, M Thomas P, Olsen, Jesper Velgaard, Lordkipanidze, D. & Willerslev, Eske, 2019, In: Nature. 574, 7776, p. 103-107

      Research output: Contribution to journal › Journal article › Research › peer-review

    14. Published

      Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits

      Chen, L., Qin, Q., Jiang, Y., Wang, K., Lin, Z., Li, Z., Bibi, F., Yang, Y., Wang, J., Nie, W., Su, W., Liu, G., Li, Q., Fu, W., Pan, X., Liu, C., Yang, J., Zhang, C., Yin, Y., Wang, Y. & 32 others, Zhao, Y., Zhang, C., Wang, Z., Qin, Y., Liu, W., Wang, B., Ren, Y., Zhang, R., Zeng, Y., Rodrigues da Fonseca, Rute Andreia, Wei, B., Li, R., Wan, W., Zhao, R., Zhu, W., Wang, Y., Duan, S., Gao, Y., Zhang, Y. E., Chen, C., Hvilsom, C., Epps, C. W., Chemnick, L. G., Doug, Y., Mirarab, S., Siegismund, Hans Redlef, Ryder, O. A., Gilbert, M Thomas P, Lewin, H. A., KU, thw266, Heller, Rasmus & Wang, W., 2019, In: Science. 364, 6446, p. 1152-

      Research output: Contribution to journal › Journal article › Research › peer-review

    15. Published

      Using metabarcoding to compare the suitability of two blood-feeding leech species for sampling mammalian diversity in North Borneo

      Drinkwater, R., Schnell, I. B., Bohmann, Kristine, Bernard, H., Veron, G., Clare, E., Gilbert, M Thomas P & Rossiter, S. J., 2019, In: Molecular Ecology Resources. 19, 1, p. 105-117

      Research output: Contribution to journal › Journal article › Research › peer-review

    16. Published

      The Genomic Footprints of the Fall and Recovery of the Crested Ibis

      Feng, S., Fang, Q., Barnett, R., Li, C., Han, S., Kuhlwilm, M., Zhou, L., Pan, H., Deng, Y., Chen, G., Gamauf, A., Woog, F., Prys-Jones, R., Marques-Bonet, T., Gilbert, M Thomas P & KU, thw266, 2019, In: Current Biology. 29, 2, p. 340-349, e1-e7

      Research output: Contribution to journal › Journal article › Research › peer-review

    17. Published

      Killer whale genomes reveal a complex history of recurrent admixture and vicariance

      Foote, A. D., Martin, M. D., Louis, M., Pacheco, G., Robertson, K. M., Sinding, M-H. S., Amaral, A. R., Baird, R. W., Baker, C. S., Ballance, L., Barlow, J., Brownlow, A., Collins, T., Constantine, R., Dabin, W., Dalla Rosa, L., Davison, N. J., Durban, J. W., Esteban, R., Ferguson, S. H. & 15 others, Gerrodette, T., Guinet, C., Hanson, M. B., Hoggard, W., Matthews, C. J. D., Samarra, F. I. P., de Stephanis, R., Tavares, S. B., Tixier, P., Totterdell, J. A., Wade, P., Excoffier, L., Gilbert, M Thomas P, Wolf, J. B. W. & Morin, P. A., 2019, In: Molecular Ecology. 28, 14, p. 3427-3444 18 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    18. Published

      Ancient pigs reveal a near-complete genomic turnover following their introduction to Europe

      Frantz, L. A. F., Haile, J., Lin, A. T., Scheu, A., Geoerg, C., Benecke, N., Alexander, M., Linderholm, A., Mullin, V. E., Daly, K. G., Battista, V. M., Price, M., Gron, K. J., Alexandri, P., Arbogast, R-M., Arbuckle, B., Balasescu, A., Barnett, R., Bartosiewicz, L., Baryshnikov, G. & 80 others, Bonsall, C., Boric, D., Boroneant, A., Bulatovic, J., Cakirlar, C., Carretero, J., Chapman, J., Church, M., Crooijmans, R., De Cupere, B., Detry, C., Dimitrijevic, V., Dumitrascu, V., du Plessis, L., Edwards, C. J., Erek, C. M., Erim-Ozdogan, A., Ervynck, A., Fulgione, D., Gligor, M., Gotherstrom, A., Gourichon, L., Groenen, M. A. M., Helmer, D., Hongo, H., Horwitz, L. K., Irving-Pease, E. K., Lebrasseur, O., Lesur, J., Malone, C., Manaseryan, N., Marciniak, A., Martlew, H., Mashkour, M., Matthews, R., Matuzeviciute, G. M., Maziar, S., Meijaard, E., McGovern, T., Megens, H., Miller, R., Mohaseb, A. F., Orschiedt, J., Orton, D., Papathanasiou, A., Pearson, M. P., Pinhasi, R., Radmanovic, D., Ricaut, F., Richards, M., Sabin, R., Sarti, L., Schier, W., Sheikhi, S., Stephan, E., Stewart, J. R., Stoddart, S., Tagliacozzo, A., Tasic, N., Trantalidou, K., Tresset, A., Valdiosera, C., van den Hurk, Y., Van Poucke, S., Vigne, J., Yanevich, A., Zeeb-Lanz, A., Triantafyllidis, A., Gilbert, M Thomas P, Schibler, J., Rowley-Conwy, P., Zeder, M., Peters, J., Cucchi, T., Bradley, D. G., Dobney, K., Burger, J., Evin, A., Girdland-Flink, L. & Larson, G., 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 35, p. 17231-17238

      Research output: Contribution to journal › Journal article › Research › peer-review

    19. Published

      A comparison of storage methods for gut microbiome studies in teleosts: insights from rainbow trout (Oncorhynchus mykiss)

      Hildonen, M., Kodama, M., Puetz, Lara Christine, Gilbert, M Thomas P & Limborg, Morten Tønsberg, 2019, In: Journal of Microbiological Methods. 160, p. 42-48

      Research output: Contribution to journal › Journal article › Research › peer-review

    20. Published

      Host-derived population genomics data provides insights into bacterial and diatom composition of the killer whale skin

      Hooper, R., Brealey, J. C., van der Valk, T., Alberdi, Antton, Durban, J. W., Fearnbach, H., Robertson, K. M., Baird, R. W., Bradley Hanson, M., Wade, P., Gilbert, M Thomas P, Morin, P. A., Wolf, J. B. W., Foote, A. D. & Guschanski, K., 2019, In: Molecular Ecology. 28, 2, p. 484-502 19 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    21. Published

      A 5700 year-old human genome and oral microbiome from chewed birch pitch

      Jensen, T. Z. T., Niemann, J., Iversen, K. H., Fotakis, A. K., Gopalakrishnan, S., Vågene, Å. J., Pedersen, M. W., Sinding, M-H. S., Ellegaard, M. R., Allentoft, M. E., Lanigan, L. T., Taurozzi, A. J., Nielsen, S. H., Dee, M. W., Mortensen, M. N., Christensen, M. C., Sørensen, S. A., Collins, M. J., Gilbert, M. T. P., Sikora, M. & 2 others, Rasmussen, Simon & Schroeder, Hannes, 2019, In: Nature Communications. 10, 10 p., 5520.

      Research output: Contribution to journal › Journal article › Research › peer-review

    22. Published

      Resolving a clinical tuberculosis outbreak using palaeogenomic genome reconstruction methodologies

      Jones, R., Sandoval-Velasco, Marcela, Harris, L. G., Morgan, S., Temple, M., Ruddy, M. C., Williams, R., Perry, M. D., Hitchings, M., Wilkinson, T. S., Humphrey, T., Gilbert, M Thomas P & Davies, A. P., Dec 2019, In: Tuberculosis. 119, 5 p., 101865.

      Research output: Contribution to journal › Journal article › Research › peer-review

    23. Published

      The Vertebrate TLR Supergene Family Evolved Dynamically by Gene Gain/Loss and Positive Selection Revealing a Host-Pathogen Arms Race in Birds

      Khan, I., Maldonado, E., Silva, L., Almeida, D., Johnson, W. E., O'Brien, S. J., KU, thw266, Jarvis, E. D., Gilbert, M Thomas P & Antunes, A., 2019, In: Diversity. 11, 8, 25 p., 131.

      Research output: Contribution to journal › Journal article › Research › peer-review

    24. Published

      Diabetic cats have decreased gut microbial diversity and a lack of butyrate producing bacteria

      Kieler, Ida Nordang, Osto, M., Hugentobler, L., Puetz, Lara Christine, Gilbert, M Thomas P, Hansen, Torben, Pedersen, Oluf Borbye, Reusch, C. E., Zini, E., Lutz, T. A. & Bjørnvad, Charlotte Reinhard, 2019, In: Scientific Reports. 9, p. 1-13 13 p., 4822.

      Research output: Contribution to journal › Journal article › Research › peer-review

    25. Published

      Mitogenomic evidence of close relationships between New Zealand's extinct giant raptors and small-sized Australian sister-taxa

      Knapp, M., Thomas, J. E., Haile, James Seymour, Prost, S., Ho, S. Y. W., Dussex, N., Cameron-Christie, S., Kardailsky, O., Barnett, R., Bunce, M., Gilbert, M Thomas P & Scofield, R. P., 2019, In: Molecular Phylogenetics and Evolution. 134, p. 122-128

      Research output: Contribution to journal › Journal article › Research › peer-review

    26. Published

      Biological adaptations in the Arctic cervid, the reindeer (Rangifer tarandus)

      Lin, Z., Chen, L., Chen, X., Zhong, Y., Yang, Y., Xia, W., Liu, C., Zhu, W., Wang, H., Yan, B., Yang, Y., Liu, X., Kvie, K. S., Røed, K. H., Wang, K., Xiao, W., Wei, H., Li, G., Heller, R., Gilbert, M. T. P. & 3 others, Qiu, Q., Wang, W. & Li, Z., 2019, In: Science. 364, 6446, p. 1154-+ 7 p., eaav6312.

      Research output: Contribution to journal › Journal article › Research › peer-review

    27. Published

      Progress for research of grape and wine culture in Georgia, the South Caucasus

      Maghradze, D., Aslanishvili, A., Mdinaradze, I., Tkemaladze, D., Mekhuzla, L., Lordkipanidze, D., Jalabadze, M., Kvavadze, E., Rusishvili, N., Mcgovern, P., This, P., Bacilieri, R., Failla, O., Cola, G., Mariani, L., Toffolatti, S. L., Lorenzis, G. D., Bianco, P. A., Quaglino, F., Wales, N. & 11 others, Gilbert, M Thomas P, Bouby, L., Kazeli, T., Ujmajuridze, L., Mamasakhlisashili, L., Batiuk, S., Graham, A., Boaretto, E., Cheishvili, A., Davitashvili, A. L. & Aurand, J. (ed.), 2019. 10 p.

      Research output: Contribution to conference › Paper › Research › peer-review

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    ID: 12980