Tom Gilbert

Tom Gilbert

Professor

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    ORCID: 0000-0002-5805-7195

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    1. Published

      Using metabarcoding to compare the suitability of two blood-feeding leech species for sampling mammalian diversity in North Borneo

      Drinkwater, R., Schnell, I. B., Bohmann, Kristine, Bernard, H., Veron, G., Clare, E., Gilbert, M Thomas P & Rossiter, S. J., 2019, In: Molecular Ecology Resources. 19, 1, p. 105-117

      Research output: Contribution to journal › Journal article › Research › peer-review

    2. Published

      The genetic origins of Saint Helena’s liberated Africans

      Sandoval-Velasco, Marcela, Jagadeesan, A., Ávila-Arcos, M. C., Gopalakrishnan, Shyam, Ramos Madrigal, Jazmin, Moreno Mayar, J. Víctor, Renaud, Gabriel, Cruz-Dávalos, D. I., Johannesdóttir, E., Watson, J., Robson-Brown, K., Pearson, A., Helgason, A., Gilbert, M Thomas P & Schroeder, Hannes, 2019, bioRxiv, 16 p.

      Research output: Working paper › Preprint › Research

    3. Published

      The discovery of Neotropical Lepidosira (Collembola, Entomobryidae) and its systematic position

      Nunes, R. C., Godeiro, N. N., Antunes Pacheco, George, Liu, Shanlin, Gilbert, M Thomas P, Alvarez-Valin, F., Zhang, F. & Bellini, B. C., 2019, In: Zoologica Scripta. 48, 6, p. 783-800

      Research output: Contribution to journal › Journal article › Research › peer-review

    4. Published

      The Vertebrate TLR Supergene Family Evolved Dynamically by Gene Gain/Loss and Positive Selection Revealing a Host-Pathogen Arms Race in Birds

      Khan, I., Maldonado, E., Silva, L., Almeida, D., Johnson, W. E., O'Brien, S. J., KU, thw266, Jarvis, E. D., Gilbert, M Thomas P & Antunes, A., 2019, In: Diversity. 11, 8, 25 p., 131.

      Research output: Contribution to journal › Journal article › Research › peer-review

    5. Published

      The Genomic Footprints of the Fall and Recovery of the Crested Ibis

      Feng, S., Fang, Q., Barnett, R., Li, C., Han, S., Kuhlwilm, M., Zhou, L., Pan, H., Deng, Y., Chen, G., Gamauf, A., Woog, F., Prys-Jones, R., Marques-Bonet, T., Gilbert, M Thomas P & KU, thw266, 2019, In: Current Biology. 29, 2, p. 340-349, e1-e7

      Research output: Contribution to journal › Journal article › Research › peer-review

    6. Published

      Taxonomic and Functional Characterization of the Microbial Community During Spontaneous in vitro Fermentation of Riesling Must

      Sirén, K., Mak, Sarah Siu Tze, Melkonian, C., Carøe, C., Swiegers, J. H., Molenaar, D., Fischer, U. & Gilbert, M Thomas P, 2019, In: Frontiers in Microbiology. 10, 17 p., 697.

      Research output: Contribution to journal › Journal article › Research › peer-review

    7. Published

      Specialized sledge dogs accompanied Inuit dispersal across the North American Arctic

      Ameen, C., Feuerborn, T. R., Brown, S. K., Linderholm, A., Hulme-Beaman, A., Lebrasseur, O., Sinding, M-H. S., Lounsberry, Z. T., Lin, A. T., Appelt, M., Bachmann, L., Betts, M., Britton, K., Darwent, J., Dietz, R., Fredholm, M., Gopalakrishnan, S., Goriunova, O. I., Grønnow, B., Haile, J. & 39 others, Hallsson, J. H., Harrison, R., Heide-Jørgensen, M. P., Knecht, R., Losey, R. J., Masson-MacLean, E., McGovern, T. H., McManus-Fry, E., Meldgaard, Morten, Midtdal, Å., Moss, M. L., Nikitin, I. G., Nomokonova, T., Pálsdóttir, A. H., Perri, A., Popov, A. N., Rankin, L., Reuther, J. D., Sablin, M., Schmidt, A. L., Shirar, S., Smiarowski, K., Sonne, C., Stiner, M. C., Vasyukov, M., West, C. F., Ween, G. B., Wennerberg, S. E., Wiig, Ø., Woollett, J., Dalén, L., Hansen, Anders Johannes, Gilbert, M Thomas P, Sacks, B. N., Frantz, L., Larson, G., Dobney, K., Darwent, C. M. & Evin, A., 2019, In: Proceedings. Biological sciences. 286, 1916, p. 20191929

      Research output: Contribution to journal › Journal article › Research › peer-review

    8. Published

      Skmer: assembly-free and alignment-free sample identification using genome skims

      Sarmashghi, S., Bohmann, Kristine, Gilbert, M Thomas P, Bafna, V. & Mirarab, S., 2019, In: Genome Biology. 20, 20 p., 34.

      Research output: Contribution to journal › Journal article › Research › peer-review

    9. Published

      Resolving a clinical tuberculosis outbreak using palaeogenomic genome reconstruction methodologies

      Jones, R., Sandoval-Velasco, Marcela, Harris, L. G., Morgan, S., Temple, M., Ruddy, M. C., Williams, R., Perry, M. D., Hitchings, M., Wilkinson, T. S., Humphrey, T., Gilbert, M Thomas P & Davies, A. P., Dec 2019, In: Tuberculosis. 119, 5 p., 101865.

      Research output: Contribution to journal › Journal article › Research › peer-review

    10. Published

      Promises and pitfalls of using high-throughput sequencing for diet analysis

      Alberdi, Antton, Aizpurua Arrieta, Ostaizka, Bohmann, Kristine, Gopalakrishnan, Shyam, Lynggaard, Christina Islas, Nielsen, M. & Gilbert, M Thomas P, Mar 2019, In: Molecular Ecology Resources. 19, 2, p. 327-348

      Research output: Contribution to journal › Review › Research › peer-review

    11. Published

      Progress for research of grape and wine culture in Georgia, the South Caucasus

      Maghradze, D., Aslanishvili, A., Mdinaradze, I., Tkemaladze, D., Mekhuzla, L., Lordkipanidze, D., Jalabadze, M., Kvavadze, E., Rusishvili, N., Mcgovern, P., This, P., Bacilieri, R., Failla, O., Cola, G., Mariani, L., Toffolatti, S. L., Lorenzis, G. D., Bianco, P. A., Quaglino, F., Wales, N. & 11 others, Gilbert, M Thomas P, Bouby, L., Kazeli, T., Ujmajuridze, L., Mamasakhlisashili, L., Batiuk, S., Graham, A., Boaretto, E., Cheishvili, A., Davitashvili, A. L. & Aurand, J. (ed.), 2019. 10 p.

      Research output: Contribution to conference › Paper › Research › peer-review

    12. Published

      Postglacial Colonization of Northern Coastal Habitat by Bottlenose Dolphins: a Marine Leading-Edge Expansion?

      Nykänen, M., Kaschner, K., Dabin, W., Brownlow, A., Davison, N. J., Deaville, R., Garilao, C., Kesner-Reyes, K., Gilbert, M Thomas P, Penrose, R., Islas-Villanueva, V., Wales, N., Ingram, S. N., Rogan, E., Louis, Marie Georgette Yolande J & Foote, A. D., 2019, In: The Journal of Heredity. 110, 6, p. 662-674

      Research output: Contribution to journal › Journal article › Research › peer-review

    13. Published

      Parallel adaptation of rabbit populations to myxoma virus

      Alves, J. M., Carneiro, M., Cheng, J. Y., Matos, A. L. D., Rahman, M. M., Loog, L., Campos, P. F., Wales, N., Eriksson, A., Manica, A., Strive, T., Graham, S. C., Afonso, S., Bell, D. J., Belmont, L., Day, J. P., Fuller, S. J., Marchandeau, S., Palmer, W. J., Queney, G. & 8 others, Surridge, A. K., Vieira, Filipe Garrett, McFadden, G., Nielsen, Rasmus, Gilbert, M Thomas P, Esteves, P. J., Ferrand, N. & Jiggins, F. M., 2019, In: Science. 363, 6433

      Research output: Contribution to journal › Journal article › Research › peer-review

    14. Published

      Palaeogenomic insights into the origins of French grapevine diversity

      Ramos Madrigal, Jazmin, Runge, Anne Kathrine Wiborg, Bouby, L., Lacombe, T., Samaniego Castruita, J. A., Adam-Blondon, A., Figueiral, I., Hallavant, C., Schaal, C., Töpfer, R., Petersen, Bent, Sicheritz-Pontén, T., This, P., Bacilieri, R., Gilbert, M Thomas P & Wales, N., 2019, In: Nature Plants. 5, 6, p. 595-603 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    15. Published

      Multi-omics and potential applications in wine production

      Sirén, K., Mak, Sarah Siu Tze, Fischer, U., Hansen, Lars Hestbjerg & Gilbert, M Thomas P, 2019, In: Current Opinion in Biotechnology. 56, p. 172-178

      Research output: Contribution to journal › Review › Research › peer-review

    16. Published

      MobiSeq: De novo SNP discovery in model and non-model species through sequencing the flanking region of transposable elements

      Rey de la Iglesia, Alba, Gopalakrishan, S., Carøe, C., Alquezar-Planas, D. E., Nielsen, A. A., Röder, T., Pedersen, Lene Bruhn, Næsborg-Nielsen, C., Sinding, Mikkel Holger Strander, Rath, Martin Fredensborg, Li, Z., Petersen, Bent, Gilbert, M Thomas P, Bunce, M., Mourier, T. & Hansen, Anders Johannes, 2019, In: Molecular Ecology Resources. 19, 2, p. 512-525 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    17. Published

      Mitogenomic evidence of close relationships between New Zealand's extinct giant raptors and small-sized Australian sister-taxa

      Knapp, M., Thomas, J. E., Haile, James Seymour, Prost, S., Ho, S. Y. W., Dussex, N., Cameron-Christie, S., Kardailsky, O., Barnett, R., Bunce, M., Gilbert, M Thomas P & Scofield, R. P., 2019, In: Molecular Phylogenetics and Evolution. 134, p. 122-128

      Research output: Contribution to journal › Journal article › Research › peer-review

    18. Published

      Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits

      Chen, L., Qin, Q., Jiang, Y., Wang, K., Lin, Z., Li, Z., Bibi, F., Yang, Y., Wang, J., Nie, W., Su, W., Liu, G., Li, Q., Fu, W., Pan, X., Liu, C., Yang, J., Zhang, C., Yin, Y., Wang, Y. & 32 others, Zhao, Y., Zhang, C., Wang, Z., Qin, Y., Liu, W., Wang, B., Ren, Y., Zhang, R., Zeng, Y., Rodrigues da Fonseca, Rute Andreia, Wei, B., Li, R., Wan, W., Zhao, R., Zhu, W., Wang, Y., Duan, S., Gao, Y., Zhang, Y. E., Chen, C., Hvilsom, C., Epps, C. W., Chemnick, L. G., Doug, Y., Mirarab, S., Siegismund, Hans Redlef, Ryder, O. A., Gilbert, M Thomas P, Lewin, H. A., KU, thw266, Heller, Rasmus & Wang, W., 2019, In: Science. 364, 6446, p. 1152-

      Research output: Contribution to journal › Journal article › Research › peer-review

    19. Published

      Killer whale genomes reveal a complex history of recurrent admixture and vicariance

      Foote, A. D., Martin, M. D., Louis, M., Pacheco, G., Robertson, K. M., Sinding, M-H. S., Amaral, A. R., Baird, R. W., Baker, C. S., Ballance, L., Barlow, J., Brownlow, A., Collins, T., Constantine, R., Dabin, W., Dalla Rosa, L., Davison, N. J., Durban, J. W., Esteban, R., Ferguson, S. H. & 15 others, Gerrodette, T., Guinet, C., Hanson, M. B., Hoggard, W., Matthews, C. J. D., Samarra, F. I. P., de Stephanis, R., Tavares, S. B., Tixier, P., Totterdell, J. A., Wade, P., Excoffier, L., Gilbert, M Thomas P, Wolf, J. B. W. & Morin, P. A., 2019, In: Molecular Ecology. 28, 14, p. 3427-3444 18 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    20. Published

      Host-derived population genomics data provides insights into bacterial and diatom composition of the killer whale skin

      Hooper, R., Brealey, J. C., van der Valk, T., Alberdi, Antton, Durban, J. W., Fearnbach, H., Robertson, K. M., Baird, R. W., Bradley Hanson, M., Wade, P., Gilbert, M Thomas P, Morin, P. A., Wolf, J. B. W., Foote, A. D. & Guschanski, K., 2019, In: Molecular Ecology. 28, 2, p. 484-502 19 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    21. Published

      High-coverage genomes to elucidate the evolution of penguins

      Pan, H., Cole, T. L., Bi, X., Fang, M., Zhou, C., Yang, Z., Ksepka, D. T., Hart, T., Bouzat, J. L., Argilla, L. S., Bertelsen, M. F., Boersma, P. D., Bost, C. A., Cherel, Y., Dann, P., Fiddaman, S. R., Howard, P., Labuschagne, K., Mattern, T., Miller, G. & 26 others, Parker, P., Phillips, R. A., Quillfeldt, P., Ryan, P. G., Taylor, H., Thompson, D. R., Young, M. J., Ellegaard, M. R., Gilbert, M Thomas P, Sinding, Mikkel Holger Strander, Antunes Pacheco, George, Shepherd, L. D., Tennyson, A. J. D., Grosser, S., Kay, E., Nupen, L. J., Ellenberg, U., Houston, D. M., Reeve, A. H., Johnson, K., Masello, J. F., Stracke, T., McKinlay, B., Borboroglu, P. G., Zhang, D. X. & KU, thw266, 2019, In: GigaScience. 8, 9, p. 1-17

      Research output: Contribution to journal › Journal article › Research › peer-review

    22. Published

      Genetic affinities of an eradicated European Plasmodium falciparum strain

      de-Dios, T., van Dorp, L., Gelabert, P., Carøe, C., Sandoval-Velasco, Marcela, Fregel, R., Escosa, R., Aranda, C., Huijben, S., Balloux, F., Gilbert, M Thomas P & Lalueza-Fox, C., 2019, In: Microbial Genomics. 5, 9, 7 p., 289.

      Research output: Contribution to journal › Journal article › Research › peer-review

    23. Published

      Early Pleistocene enamel proteome from Dmanisi resolves Stephanorhinus phylogeny

      Cappellini, E., Welker, F., Pandolfi, L., Ramos-Madrigal, J., Samodova, D., Rüther, P. L., Fotakis, A. K., Lyon, D., Moreno-Mayar, J. V., Bukhsianidze, M., Rakownikow Jersie-Christensen, R., Mackie, M., Ginolhac, A., Ferring, R., Tappen, M., Palkopoulou, E., Dickinson, M. R., Stafford, T. W., Chan, Y. L., Götherström, A. & 23 others, Nathan, S. K. S. S., Heintzman, P. D., Kapp, J. D., Kirillova, I., Moodley, Y., Agusti, J., Kahlke, R. D., Kiladze, G., Martínez-Navarro, B., Liu, Shanlin, Sandoval-Velasco, Marcela, Sinding, Mikkel Holger Strander, Kelstrup, C. D., Allentoft, Morten Erik, Orlando, L., Penkman, K., Shapiro, B., Rook, L., Dalén, L., Gilbert, M Thomas P, Olsen, Jesper Velgaard, Lordkipanidze, D. & Willerslev, Eske, 2019, In: Nature. 574, 7776, p. 103-107

      Research output: Contribution to journal › Journal article › Research › peer-review

    24. Published

      Diabetic cats have decreased gut microbial diversity and a lack of butyrate producing bacteria

      Kieler, Ida Nordang, Osto, M., Hugentobler, L., Puetz, Lara Christine, Gilbert, M Thomas P, Hansen, Torben, Pedersen, Oluf Borbye, Reusch, C. E., Zini, E., Lutz, T. A. & Bjørnvad, Charlotte Reinhard, 2019, In: Scientific Reports. 9, p. 1-13 13 p., 4822.

      Research output: Contribution to journal › Journal article › Research › peer-review

    25. Published

      Demographic reconstruction from ancient DNA supports rapid extinction of the great auk

      Thomas, J. E., Carvalho, G. R., Haile, J., Rawlence, N. J., Martin, M. D., Ho, S. Y. W., Sigfusson, A. P., Josefsson, V. A., Frederiksen, M., Linnebjerg, J. F., Castruita, J. A. S., Niemann, J., Sinding, M-H. S., Sandoval-Velasco, M., Soares, A. E. R., Lacy, R., Barilaro, C., Best, J., Brandis, D., Cavallo, C. & 17 others, Elorza, M., Garrett, K. L., Groot, M., Johansson, F., Lifjeld, J. T., Nilson, G., Serjeanston, D., Sweet, P., Fuller, E., Hufthammer, A. K., Meldgaard, Morten, Fjeldså, Jon, Shapiro, B., Hofreiter, M., Stewart, J. R., Gilbert, M Thomas P & Knapp, M., 2019, In: eLife. 8, 35 p., e47509.

      Research output: Contribution to journal › Journal article › Research › peer-review

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    ID: 12980