FrAnTK: a Frequency-based Analysis ToolKit for efficient exploration of allele sharing patterns in present-day and ancient genomic datasets
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FrAnTK : a Frequency-based Analysis ToolKit for efficient exploration of allele sharing patterns in present-day and ancient genomic datasets. / Moreno-Mayar, J. Víctor.
In: G3: Genes, Genomes, Genetics, Vol. 12, No. 1, jkab357, 2022.Research output: Contribution to journal › Journal article › Research › peer-review
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TY - JOUR
T1 - FrAnTK
T2 - a Frequency-based Analysis ToolKit for efficient exploration of allele sharing patterns in present-day and ancient genomic datasets
AU - Moreno-Mayar, J. Víctor
PY - 2022
Y1 - 2022
N2 - Present-day and ancient population genomic studies from different study organisms have rapidly become accessible to diverse research groups worldwide. Unfortunately, as datasets and analyses become more complex, researchers with less computational experience often miss their chance to analyze their own data. We introduce FrAnTK, a user-friendly toolkit for computation and visualization of allele frequency-based statistics in ancient and present-day genome variation datasets. We provide fast, memory-efficient tools that allow the user to go from sequencing data to complex exploratory analyses and visual representations with minimal data manipulation. Its simple usage and low computational requirements make FrAnTK ideal for users that are less familiar with computer programming carrying out large-scale population studies.
AB - Present-day and ancient population genomic studies from different study organisms have rapidly become accessible to diverse research groups worldwide. Unfortunately, as datasets and analyses become more complex, researchers with less computational experience often miss their chance to analyze their own data. We introduce FrAnTK, a user-friendly toolkit for computation and visualization of allele frequency-based statistics in ancient and present-day genome variation datasets. We provide fast, memory-efficient tools that allow the user to go from sequencing data to complex exploratory analyses and visual representations with minimal data manipulation. Its simple usage and low computational requirements make FrAnTK ideal for users that are less familiar with computer programming carrying out large-scale population studies.
KW - population genomics
KW - allele sharing statistics
KW - user-friendly pipeline
KW - ancient DNA
KW - python
KW - R
KW - perl
KW - SEQUENCE
KW - ANCESTRY
KW - POPULATIONS
U2 - 10.1093/g3journal/jkab357
DO - 10.1093/g3journal/jkab357
M3 - Journal article
C2 - 34791203
VL - 12
JO - G3: Genes, Genomes, Genetics (Bethesda)
JF - G3: Genes, Genomes, Genetics (Bethesda)
SN - 2160-1836
IS - 1
M1 - jkab357
ER -
ID: 291295967