Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems

Research output: Contribution to journal › Journal article › Research › peer-review

Standard

Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems. / Richter, Daniel J.; Watteaux, Romain; Vannier, Thomas; Leconte, Jade; Frémont, Paul; Reygondeau, Gabriel; Maillet, Nicolas; Henry, Nicolas; Benoit, Gaëtan; Da Silva, Ophélie; Delmont, Tom O.; Fernàndez-Guerra, Antonio; Suweis, Samir; Narci, Romain; Berney, Cédric; Eveillard, Damien; Gavory, Frederick; Guidi, Lionel; Labadie, Karine; Mahieu, Eric; Poulain, Julie; Romac, Sarah; Roux, Simon; Dimier, Céline; Kandels, Stefanie; Picheral, Marc; Searson, Sarah; Pesant, Stéphane; Aury, Jean-Marc; Brum, Jennifer R.; Lemaitre, Claire; Pelletier, Eric; Bork, Peer; Sunagawa, Shinichi; Lombard, Fabien; Karp-Boss, Lee; Bowler, Chris; Sullivan, Matthew B.; Karsenti, Eric; Mariadassou, Mahendra; Probert, Ian; Peterlongo, Pierre; Wincker, Patrick; de Vargas, Colomban; d'Alcalà, Maurizio Ribera; Iudicone, Daniele; Jaillon, Olivier.

In: eLife, Vol. 11, e78129, 2022.

Research output: Contribution to journal › Journal article › Research › peer-review

Harvard

Richter, DJ, Watteaux, R, Vannier, T, Leconte, J, Frémont, P, Reygondeau, G, Maillet, N, Henry, N, Benoit, G, Da Silva, O, Delmont, TO, Fernàndez-Guerra, A, Suweis, S, Narci, R, Berney, C, Eveillard, D, Gavory, F, Guidi, L, Labadie, K, Mahieu, E, Poulain, J, Romac, S, Roux, S, Dimier, C, Kandels, S, Picheral, M, Searson, S, Pesant, S, Aury, J-M, Brum, JR, Lemaitre, C, Pelletier, E, Bork, P, Sunagawa, S, Lombard, F, Karp-Boss, L, Bowler, C, Sullivan, MB, Karsenti, E, Mariadassou, M, Probert, I, Peterlongo, P, Wincker, P, de Vargas, C, d'Alcalà, MR, Iudicone, D & Jaillon, O 2022, 'Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems', eLife, vol. 11, e78129. https://doi.org/10.7554/eLife.78129

APA

Richter, D. J., Watteaux, R., Vannier, T., Leconte, J., Frémont, P., Reygondeau, G., Maillet, N., Henry, N., Benoit, G., Da Silva, O., Delmont, T. O., Fernàndez-Guerra, A., Suweis, S., Narci, R., Berney, C., Eveillard, D., Gavory, F., Guidi, L., Labadie, K., ... Jaillon, O. (2022). Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems. eLife, 11, [e78129]. https://doi.org/10.7554/eLife.78129

Vancouver

Richter DJ, Watteaux R, Vannier T, Leconte J, Frémont P, Reygondeau G et al. Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems. eLife. 2022;11. e78129. https://doi.org/10.7554/eLife.78129

Author

Richter, Daniel J. ; Watteaux, Romain ; Vannier, Thomas ; Leconte, Jade ; Frémont, Paul ; Reygondeau, Gabriel ; Maillet, Nicolas ; Henry, Nicolas ; Benoit, Gaëtan ; Da Silva, Ophélie ; Delmont, Tom O. ; Fernàndez-Guerra, Antonio ; Suweis, Samir ; Narci, Romain ; Berney, Cédric ; Eveillard, Damien ; Gavory, Frederick ; Guidi, Lionel ; Labadie, Karine ; Mahieu, Eric ; Poulain, Julie ; Romac, Sarah ; Roux, Simon ; Dimier, Céline ; Kandels, Stefanie ; Picheral, Marc ; Searson, Sarah ; Pesant, Stéphane ; Aury, Jean-Marc ; Brum, Jennifer R. ; Lemaitre, Claire ; Pelletier, Eric ; Bork, Peer ; Sunagawa, Shinichi ; Lombard, Fabien ; Karp-Boss, Lee ; Bowler, Chris ; Sullivan, Matthew B. ; Karsenti, Eric ; Mariadassou, Mahendra ; Probert, Ian ; Peterlongo, Pierre ; Wincker, Patrick ; de Vargas, Colomban ; d'Alcalà, Maurizio Ribera ; Iudicone, Daniele ; Jaillon, Olivier. / Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems. In: eLife. 2022 ; Vol. 11.

Bibtex

@article{9617a8a02dcb447f962aba89ed15f57f,
title = "Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems",
abstract = "Biogeographical studies have traditionally focused on readily visible organisms, but recent technological advances are enabling analyses of the large-scale distribution of microscopic organisms, whose biogeographical patterns have long been debated. Here we assessed the global structure of plankton geography and its relation to the biological, chemical and physical context of the ocean (the `seascape') by analyzing metagenomes of plankton communities sampled across oceans during the Tara Oceans expedition, in light of environmental data and ocean current transport. Using a consistent approach across organismal sizes that provides unprecedented resolution to measure changes in genomic composition between communities, we report a pan-ocean, size-dependent plankton biogeography overlying regional heterogeneity. We found robust evidence for a basin-scale impact of transport by ocean currents on plankton biogeography, and on a characteristic timescale of community dynamics going beyond simple seasonality or life history transitions of plankton. ",
author = "Richter, {Daniel J.} and Romain Watteaux and Thomas Vannier and Jade Leconte and Paul Fr{\'e}mont and Gabriel Reygondeau and Nicolas Maillet and Nicolas Henry and Ga{\"e}tan Benoit and {Da Silva}, Oph{\'e}lie and Delmont, {Tom O.} and Antonio Fern{\`a}ndez-Guerra and Samir Suweis and Romain Narci and C{\'e}dric Berney and Damien Eveillard and Frederick Gavory and Lionel Guidi and Karine Labadie and Eric Mahieu and Julie Poulain and Sarah Romac and Simon Roux and C{\'e}line Dimier and Stefanie Kandels and Marc Picheral and Sarah Searson and St{\'e}phane Pesant and Jean-Marc Aury and Brum, {Jennifer R.} and Claire Lemaitre and Eric Pelletier and Peer Bork and Shinichi Sunagawa and Fabien Lombard and Lee Karp-Boss and Chris Bowler and Sullivan, {Matthew B.} and Eric Karsenti and Mahendra Mariadassou and Ian Probert and Pierre Peterlongo and Patrick Wincker and {de Vargas}, Colomban and d'Alcal{\`a}, {Maurizio Ribera} and Daniele Iudicone and Olivier Jaillon",
year = "2022",
doi = "10.7554/eLife.78129",
language = "English",
volume = "11",
journal = "eLife",
issn = "2050-084X",
publisher = "eLife Sciences Publications Ltd.",

}

RIS

TY - JOUR

T1 - Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems

AU - Richter, Daniel J.

AU - Watteaux, Romain

AU - Vannier, Thomas

AU - Leconte, Jade

AU - Frémont, Paul

AU - Reygondeau, Gabriel

AU - Maillet, Nicolas

AU - Henry, Nicolas

AU - Benoit, Gaëtan

AU - Da Silva, Ophélie

AU - Delmont, Tom O.

AU - Fernàndez-Guerra, Antonio

AU - Suweis, Samir

AU - Narci, Romain

AU - Berney, Cédric

AU - Eveillard, Damien

AU - Gavory, Frederick

AU - Guidi, Lionel

AU - Labadie, Karine

AU - Mahieu, Eric

AU - Poulain, Julie

AU - Romac, Sarah

AU - Roux, Simon

AU - Dimier, Céline

AU - Kandels, Stefanie

AU - Picheral, Marc

AU - Searson, Sarah

AU - Pesant, Stéphane

AU - Aury, Jean-Marc

AU - Brum, Jennifer R.

AU - Lemaitre, Claire

AU - Pelletier, Eric

AU - Bork, Peer

AU - Sunagawa, Shinichi

AU - Lombard, Fabien

AU - Karp-Boss, Lee

AU - Bowler, Chris

AU - Sullivan, Matthew B.

AU - Karsenti, Eric

AU - Mariadassou, Mahendra

AU - Probert, Ian

AU - Peterlongo, Pierre

AU - Wincker, Patrick

AU - de Vargas, Colomban

AU - d'Alcalà, Maurizio Ribera

AU - Iudicone, Daniele

AU - Jaillon, Olivier

PY - 2022

Y1 - 2022

N2 - Biogeographical studies have traditionally focused on readily visible organisms, but recent technological advances are enabling analyses of the large-scale distribution of microscopic organisms, whose biogeographical patterns have long been debated. Here we assessed the global structure of plankton geography and its relation to the biological, chemical and physical context of the ocean (the `seascape') by analyzing metagenomes of plankton communities sampled across oceans during the Tara Oceans expedition, in light of environmental data and ocean current transport. Using a consistent approach across organismal sizes that provides unprecedented resolution to measure changes in genomic composition between communities, we report a pan-ocean, size-dependent plankton biogeography overlying regional heterogeneity. We found robust evidence for a basin-scale impact of transport by ocean currents on plankton biogeography, and on a characteristic timescale of community dynamics going beyond simple seasonality or life history transitions of plankton.

AB - Biogeographical studies have traditionally focused on readily visible organisms, but recent technological advances are enabling analyses of the large-scale distribution of microscopic organisms, whose biogeographical patterns have long been debated. Here we assessed the global structure of plankton geography and its relation to the biological, chemical and physical context of the ocean (the `seascape') by analyzing metagenomes of plankton communities sampled across oceans during the Tara Oceans expedition, in light of environmental data and ocean current transport. Using a consistent approach across organismal sizes that provides unprecedented resolution to measure changes in genomic composition between communities, we report a pan-ocean, size-dependent plankton biogeography overlying regional heterogeneity. We found robust evidence for a basin-scale impact of transport by ocean currents on plankton biogeography, and on a characteristic timescale of community dynamics going beyond simple seasonality or life history transitions of plankton.

U2 - 10.7554/eLife.78129

DO - 10.7554/eLife.78129

M3 - Journal article

C2 - 35920817

VL - 11

JO - eLife

JF - eLife

SN - 2050-084X

M1 - e78129

ER -

ID: 321958581